chr13:20189450:C>T Detail (hg38) (GJB2)

Information

Genome

Assembly Position
hg19 chr13:20,763,589-20,763,589 View the variant detail on this assembly version.
hg38 chr13:20,189,450-20,189,450

HGVS

Type Transcript Protein
RefSeq NM_004004.5:c.132G>A NP_003995.2:p.Trp44Ter
Ensemble ENST00000382844.2:c.132G>A ENST00000382844.2:p.Trp44Ter
ENST00000382848.5:c.132G>A ENST00000382848.5:p.Trp44Ter
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 121011 OMIM
HGNC 4284 HGNC
Ensembl ENSG00000165474 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv382381078 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2013-02-08 criteria provided, single submitter germline Detail
Pathogenic 2023-12-20 criteria provided, multiple submitters, no conflicts not provided germline Detail
Pathogenic 2021-12-24 criteria provided, multiple submitters, no conflicts Autosomal recessive nonsyndromic hearing loss 1A germline inherited unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.360 DEAFNESS, AUTOSOMAL DOMINANT 3A (disorder) NA CLINVAR Detail
0.133 palmoplantar keratosis HeLa cells stably expressing nine dominant Cx26 mutants, six associated with non... BeFree 20096356 Detail
<0.001 palmoplantar keratosis HeLa cells stably expressing nine dominant Cx26 mutants, six associated with non... BeFree 20096356 Detail
0.133 palmoplantar keratosis HeLa cells stably expressing wild type Cx26 were transiently transfected to co-e... BeFree 21040787 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_004004.6(GJB2):c.132G>A (p.Trp44Ter) AND Hearing impairment ClinVar Detail
NM_004004.6(GJB2):c.132G>A (p.Trp44Ter) AND not provided ClinVar Detail
NM_004004.6(GJB2):c.132G>A (p.Trp44Ter) AND Autosomal recessive nonsyndromic hearing loss 1A ClinVar Detail
NA DisGeNET Detail
HeLa cells stably expressing nine dominant Cx26 mutants, six associated with non-syndromic hearing l... DisGeNET Detail
HeLa cells stably expressing nine dominant Cx26 mutants, six associated with non-syndromic hearing l... DisGeNET Detail
HeLa cells stably expressing wild type Cx26 were transiently transfected to co-express nine individu... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs104894407 dbSNP
Genome
hg38
Position
chr13:20,189,450-20,189,450
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8652
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121276
Allele Counts in All Race (ExAC)
7
Heterozygous Counts in All Race (ExAC)
7
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
5.771958178040173E-5
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