chr11:86077309:C>T Detail (hg38)

Information

Genome

Assembly Position
hg19 chr11:85,788,351-85,788,351 View the variant detail on this assembly version.
hg38 chr11:86,077,309-86,077,309

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.456
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.287 Alzheimer's disease In addition, the rs541458 and rs3851179 of PICALM SNPs are not related to develo... BeFree 26434199 Detail
0.269 Alzheimer's disease In addition, the rs541458 and rs3851179 of PICALM SNPs are not related to develo... BeFree 26434199 Detail
Annotation

Annotations

DescrptionSourceLinks
In addition, the rs541458 and rs3851179 of PICALM SNPs are not related to development of BPSD, but t... DisGeNET Detail
In addition, the rs541458 and rs3851179 of PICALM SNPs are not related to development of BPSD, but t... DisGeNET Detail
Gene
-
dbSNP
rs541458 dbSNP
Genome
hg38
Position
chr11:86,077,309-86,077,309
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs541458
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4556
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7635
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16758
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