chr11:5227159:G>T Detail (hg38) (HBB, LOC106099062, LOC107133510)

Information

Genome

Assembly Position
hg19 chr11:5,248,389-5,248,389 View the variant detail on this assembly version.
hg38 chr11:5,227,159-5,227,159

HGVS

Type Transcript Protein
RefSeq
Ensemble ENST00000647020.1:c.-138C>A
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Conflicting classifications of pathogenicity
Review star
Show details
Links
Type Database ID Link
Gene MIM 141900 OMIM
HGNC 4827 HGNC
Ensembl ENSG00000244734 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 1991-01-01 no assertion criteria provided Beta-plus-thalassemia germline Detail
Pathogenic 2022-11-03 criteria provided, single submitter beta thalassemia germline unknown Detail
Pathogenic 2023-10-13 criteria provided, multiple submitters, no conflicts not provided germline unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Likely pathogenic 2018-10-31 criteria provided, single submitter beta thalassemia,alpha thalassemia,Malaria, susceptibility to,Methemoglobinemia, beta-globin type,Erythrocytosis, familial, 6,Hb SS disease,Fetal hemoglobin quantitative trait locus 1,Dominant beta-thalassemia,Heinz body anemia unknown Detail
Pathogenic 2018-11-01 criteria provided, single submitter hemoglobinopathy germline Detail
Uncertain significance 2024-01-18 criteria provided, single submitter not specified germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.287 alpha-Thalassemia NA CLINVAR Detail
0.244 Beta thalassemia intermedia NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000518.5(HBB):c.-138C>A AND Beta-plus-thalassemia ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND beta Thalassemia ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND not provided ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND multiple conditions ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND Hemoglobinopathy ClinVar Detail
NM_000518.5(HBB):c.-138C>A AND not specified ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs33944208 dbSNP
Genome
hg38
Position
chr11:5,227,159-5,227,159
Variant Type
snv
Reference Allele
G
Alternative Allele
T
Genome browser