chr10:46046326:A>G Detail (hg38) (MSMB)

Information

Genome

Assembly Position
hg19 chr10:51,549,495-51,549,495 
hg38 chr10:46,046,326-46,046,326

HGVS

Type Transcript Protein
RefSeq
Ensemble ENST00000663171.1:c.-89T>C
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 157145 OMIM
HGNC 7372 HGNC
Ensembl ENSG00000263639 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv39243680 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.256 Malignant neoplasm of prostate Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4,... BeFree 20717903 Detail
0.003 prostate carcinoma Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4,... BeFree 20717903 Detail
0.005 Malignant neoplasm of prostate Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4,... BeFree 20717903 Detail
0.011 prostate carcinoma Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4,... BeFree 20717903 Detail
0.011 prostate carcinoma Association of prostate cancer susceptibility variant (MSMB) rs10993994 with ris... BeFree 23608167 Detail
0.256 Malignant neoplasm of prostate Genome-wide association study identifies five new susceptibility loci for prosta... GWASCAT 20676098 Detail
0.141 Prostatic Neoplasms [Genome-wide association study identifies new prostate cancer susceptibility loc... GAD 21743057 Detail
0.256 Malignant neoplasm of prostate Association of prostate cancer susceptibility variant (MSMB) rs10993994 with ris... BeFree 23608167 Detail
<0.001 Lymphoma, Non-Hodgkin In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.256 Malignant neoplasm of prostate Genome-wide association scan for variants associated with early-onset prostate c... GWASCAT 24740154 Detail
0.141 Prostatic Neoplasms [Multiple loci identified in a genome-wide association study of prostate cancer.... GAD 18264096 Detail
0.003 Lymphoma, Non-Hodgkin In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.256 Malignant neoplasm of prostate [The rs10993994 risk allele for prostate cancer results in clinically relevant c... GAD 20967219 Detail
0.256 Malignant neoplasm of prostate Genetic variation in prostate-specific antigen-detected prostate cancer and the ... GWASCAT 24753544 Detail
0.256 Malignant neoplasm of prostate Loci on chromosome 10 include MSMB, which encodes beta-microseminoprotein, a pri... GWASCAT 18264096 Detail
<0.001 Lymphoma, Non-Hodgkin In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
<0.001 Lymphoma, Large-Cell, Follicular In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.240 Prostate cancer, hereditary, 13 NA CLINVAR Detail
<0.001 Lymphoma, Large-Cell, Follicular In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
<0.001 Lymphoma, Large-Cell, Follicular In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
<0.001 Lymphoma, Non-Hodgkin In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.256 Malignant neoplasm of prostate The rs10993994 risk allele for prostate cancer results in clinically relevant ch... BeFree 20967219 Detail
0.011 prostate carcinoma The rs10993994 risk allele for prostate cancer results in clinically relevant ch... BeFree 20967219 Detail
0.141 Prostatic Neoplasms [Multiple newly identified loci associated with prostate cancer susceptibility.] GAD 18264097 Detail
<0.001 Lymphoma, Large-Cell, Follicular In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
<0.001 Lymphoma, Large-Cell, Follicular In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.256 Malignant neoplasm of prostate Multiple newly identified loci associated with prostate cancer susceptibility. GWASCAT 18264097 Detail
<0.001 Lymphoma, Non-Hodgkin In the pleiotropy analysis, six risk variants for other cancers were associated ... BeFree 24598796 Detail
0.141 Prostatic Neoplasms [Genome-wide association study identifies five new susceptibility loci for prost... GAD 20676098 Detail
Annotation

Annotations

DescrptionSourceLinks
Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4, a SNP that has been... DisGeNET Detail
Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4, a SNP that has been... DisGeNET Detail
Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4, a SNP that has been... DisGeNET Detail
Of note, rs7000448 is in strong linkage disequilibrium with rs10761581 in NCOA4, a SNP that has been... DisGeNET Detail
Association of prostate cancer susceptibility variant (MSMB) rs10993994 with risk of spermatogenic f... DisGeNET Detail
Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Jap... DisGeNET Detail
[Genome-wide association study identifies new prostate cancer susceptibility loci.] DisGeNET Detail
Association of prostate cancer susceptibility variant (MSMB) rs10993994 with risk of spermatogenic f... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
Genome-wide association scan for variants associated with early-onset prostate cancer. DisGeNET Detail
[Multiple loci identified in a genome-wide association study of prostate cancer.] DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
[The rs10993994 risk allele for prostate cancer results in clinically relevant changes in microsemin... DisGeNET Detail
Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control se... DisGeNET Detail
Loci on chromosome 10 include MSMB, which encodes beta-microseminoprotein, a primary constituent of ... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
NA DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
The rs10993994 risk allele for prostate cancer results in clinically relevant changes in microsemino... DisGeNET Detail
The rs10993994 risk allele for prostate cancer results in clinically relevant changes in microsemino... DisGeNET Detail
[Multiple newly identified loci associated with prostate cancer susceptibility.] DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
Multiple newly identified loci associated with prostate cancer susceptibility. DisGeNET Detail
In the pleiotropy analysis, six risk variants for other cancers were associated with NHL risk, inclu... DisGeNET Detail
[Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Ja... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs10993994 dbSNP
Genome
hg38
Position
chr10:46,046,326-46,046,326
Variant Type
snv
Reference Allele
A
Alternative Allele
G
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