chr1:100718269:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:101,183,825-101,183,825 View the variant detail on this assembly version. |
| hg38 | chr1:100,718,269-100,718,269 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.149 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Lymphoma, Large-Cell, Follicular | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased N... | BeFree | 19533685 | Detail |
| <0.001 | Lymphoma, Non-Hodgkin | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased N... | BeFree | 19533685 | Detail |
| <0.001 | Lymphoma, Large-Cell, Follicular | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased N... | BeFree | 19533685 | Detail |
| 0.003 | Lymphoma, Non-Hodgkin | Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased N... | BeFree | 19533685 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) =... | DisGeNET | Detail |
| Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) =... | DisGeNET | Detail |
| Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) =... | DisGeNET | Detail |
| Interleukin 13 (IL13) Ex4+98A>G SNP (rs20541) was associated with decreased NHL risk (OR(AG/AA) =... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs1041163 dbSNP
- Genome
- hg38
- Position
- chr1:100,718,269-100,718,269
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs1041163
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1491
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2499
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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