chr9:34743681:G>A Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr9:34,743,681-34,743,681 |
| hg38 | chr9:34,743,684-34,743,684 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.979 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | diabetes mellitus | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | diabetes mellitus | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | Adult type dermatomyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | dermatomyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | Adult type dermatomyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| 0.003 | dermatomyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | diabetes mellitus | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | polymyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| <0.001 | polymyositis | Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=52... | BeFree | 26320593 | Detail |
| 0.003 | polymyositis | A single-nucleotide polymorphism of CCL21 rs951005 T>C is associated with sus... | BeFree | 26320593 | Detail |
| <0.001 | Lung Diseases, Interstitial | A single-nucleotide polymorphism of CCL21 rs951005 T>C is associated with sus... | BeFree | 26320593 | Detail |
| 0.002 | rheumatoid arthritis | [Genome-wide association study meta-analysis identifies seven new rheumatoid art... | GAD | 20453842 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| Chinese polymyositis (PM) patients (n =291), dermatomyositis (DM) patients (n=526) and ethnically-ma... | DisGeNET | Detail |
| A single-nucleotide polymorphism of CCL21 rs951005 T>C is associated with susceptibility of polym... | DisGeNET | Detail |
| A single-nucleotide polymorphism of CCL21 rs951005 T>C is associated with susceptibility of polym... | DisGeNET | Detail |
| [Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.] | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs951005 dbSNP
- Genome
- hg19
- Position
- chr9:34,743,681-34,743,681
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs951005
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.979
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16408
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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