chr9:110888478:G>T Detail (hg19)

Information

Genome

Assembly Position
hg19 chr9:110,888,478-110,888,478
hg38 chr9:108,126,198-108,126,198 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.929
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Mammographic Density The effect of 6q25.1-rs3734805 on percent MD varied between parous and nulliparo... BeFree 25002657 Detail
<0.001 breast carcinoma Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.080 breast carcinoma Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carr... BeFree 22348646 Detail
0.023 breast carcinoma Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.043 Malignant neoplasm of breast Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.240 Malignant neoplasm of breast Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carr... BeFree 22348646 Detail
0.121 Malignant neoplasm of breast Recent genome-wide association studies of breast cancer have identified eight ad... BeFree 22348646 Detail
0.080 breast carcinoma We recently identified a novel susceptibility variant, rs865686, for estrogen-re... BeFree 25652398 Detail
0.240 Malignant neoplasm of breast We recently identified a novel susceptibility variant, rs865686, for estrogen-re... BeFree 25652398 Detail
0.240 Malignant neoplasm of breast 9q31.2-rs865686 as a susceptibility locus for estrogen receptor-positive breast ... BeFree 22859399 Detail
0.080 breast carcinoma 9q31.2-rs865686 as a susceptibility locus for estrogen receptor-positive breast ... BeFree 22859399 Detail
Annotation

Annotations

DescrptionSourceLinks
The effect of 6q25.1-rs3734805 on percent MD varied between parous and nulliparous women (Pinteracti... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carriers: rs10995190, P-... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
Four SNPs were associated with the risk of breast cancer for BRCA2 mutation carriers: rs10995190, P-... DisGeNET Detail
Recent genome-wide association studies of breast cancer have identified eight additional breast canc... DisGeNET Detail
We recently identified a novel susceptibility variant, rs865686, for estrogen-receptor positive brea... DisGeNET Detail
We recently identified a novel susceptibility variant, rs865686, for estrogen-receptor positive brea... DisGeNET Detail
9q31.2-rs865686 as a susceptibility locus for estrogen receptor-positive breast cancer: evidence fro... DisGeNET Detail
9q31.2-rs865686 as a susceptibility locus for estrogen receptor-positive breast cancer: evidence fro... DisGeNET Detail
Gene
-
dbSNP
rs865686 dbSNP
Genome
hg19
Position
chr9:110,888,478-110,888,478
Variant Type
snv
Reference Allele
G
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs865686
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.9291
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
15571
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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