chr6:31074030:A>C Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:31,074,030-31,074,030 |
| hg38 | chr6:31,106,253-31,106,253 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.583 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.001 | Lymphoma, Follicular | In recent genome-wide association studies (GWAS) of FL, several genetic suscepti... | BeFree | 23025665 | Detail |
| 0.005 | Lymphoma, Follicular | [Genome-wide association study of follicular lymphoma identifies a risk locus at... | GAD | 20639881 | Detail |
| 0.005 | Lymphoma, Follicular | [Genetic variants at 6p21.33 are associated with susceptibility to follicular ly... | GAD | 19620980 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| In recent genome-wide association studies (GWAS) of FL, several genetic susceptibility loci have bee... | DisGeNET | Detail |
| [Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.] | DisGeNET | Detail |
| [Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.] | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs6457327 dbSNP
- Genome
- hg19
- Position
- chr6:31,074,030-31,074,030
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs6457327
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.5829
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 9770
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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