chr6:10439968:T>C Detail (hg19)

Information

Genome

Assembly Position
hg19 chr6:10,439,968-10,439,968
hg38 chr6:10,439,735-10,439,735 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.213
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
<0.001 Nasopharyngeal carcinoma In this study, we analyzed associations between eight SNPs in miRNA mature seque... BeFree 25861865 Detail
Annotation

Annotations

DescrptionSourceLinks
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail
In this study, we analyzed associations between eight SNPs in miRNA mature sequences (i.e., rs374644... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs9295535 dbSNP
Genome
hg19
Position
chr6:10,439,968-10,439,968
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs9295535
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.2127
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
3565
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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