chr5:112163698:C>T Detail (hg19) (APC)

Information

Genome

Assembly Position
hg19 chr5:112,163,698-112,163,698
hg38 chr5:112,828,001-112,828,001 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000038.5:c.1621C>T NP_000029.2:p.Gln541Ter
NM_001127511.2:c.1567C>T NP_001120983.2:p.Gln523Ter
NM_001127510.2:c.1621C>T NP_001120982.1:p.Gln541Ter
Summary

MGeND

Clinical significance Pathogenic
Variant entry 1
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 611731 OMIM
HGNC 583 HGNC
Ensembl ENSG00000134982 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM13860 COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
Pathogenic 2020/04/20 colon, unspecified not provided MGS000041
(TMGS000094)
Hitoshi Nakagama National Cancer Center Japan
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 1995-03-30 no assertion criteria provided familial adenomatous polyposis 1 germline Detail
Pathogenic 1995-03-30 no assertion criteria provided Brain tumor-polyposis syndrome 2 germline Detail
Pathogenic 2022-01-15 criteria provided, single submitter Hereditary cancer-predisposing syndrome germline Detail
Pathogenic no assertion criteria provided Carcinoma of colon unknown Detail
Pathogenic 2018-03-06 criteria provided, multiple submitters, no conflicts not provided germline Detail
Pathogenic 2023-05-02 criteria provided, multiple submitters, no conflicts familial adenomatous polyposis 1 unknown Detail
Pathogenic 2024-01-30 criteria provided, single submitter familial adenomatous polyposis 1 germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.120 Polyposis, Adenomatous Intestinal NA CLINVAR Detail
0.120 BRAIN TUMOR-POLYPOSIS SYNDROME 2 (disorder) NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Familial adenomatous polyposis 1 ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Brain tumor-polyposis syndrome 2 ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Carcinoma of colon ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND not provided ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Familial adenomatous polyposis 1 ClinVar Detail
NM_000038.6(APC):c.1621C>T (p.Gln541Ter) AND Familial adenomatous polyposis 1 ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs137854572 dbSNP
Genome
hg19
Position
chr5:112,163,698-112,163,698
Variant Type
snv
Reference Allele
C
Alternative Allele
T
Genome browser