chr3:37035123:G>T Detail (hg19) (MLH1)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:37,035,123-37,035,123
hg38	chr3:36,993,632-36,993,632 View the variant detail on this assembly version.

HGVS

MLH1

Type	Transcript	Protein
RefSeq	NM_000249.3:c.85G>T	NP_000240.1:p.Ala29Ser
	NM_001258271.1:c.85G>T	NP_001245200.1:p.Ala29Ser
	NM_001258273.1:c.-548G>T
Ensemble	ENST00000231790.8:c.85G>T	ENST00000231790.8:p.Ala29Ser
	ENST00000450420.6:c.85G>T	ENST00000450420.6:p.Ala29Ser
	ENST00000456676.7:c.85G>T	ENST00000456676.7:p.Ala29Ser
	ENST00000536378.5:c.-548G>T
	ENST00000616768.6:c.85G>T	ENST00000616768.6:p.Ala29Ser
	ENST00000673673.2:c.85G>T	ENST00000673673.2:p.Ala29Ser
	ENST00000673715.1:c.85G>T	ENST00000673715.1:p.Ala29Ser
	ENST00000673899.1:c.85G>T	ENST00000673899.1:p.Ala29Ser
	ENST00000713802.1:c.85G>T	ENST00000713802.1:p.Ala29Ser

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Conflicting classifications of pathogenicity
Review star
Show details

Links

MLH1

Type	Database	ID	Link
Gene	MIM	120436	OMIM
	HGNC	7127	HGNC
	Ensembl	ENSG00000076242	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2020-10-19	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Uncertain significance		no assertion criteria provided	not specified	unknown	Detail
Uncertain significance	2023-03-14	criteria provided, multiple submitters, no conflicts	Colorectal cancer, hereditary nonpolyposis, type 2	unknown	Detail
Uncertain significance	2023-12-31	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
Conflicting interpretations of pathogenicity	2020-11-05	criteria provided, conflicting interpretations	not provided	germline	Detail
Pathogenic	2018-03-09	reviewed by expert panel	Lynch syndrome 1	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.121	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail
0.329	Hereditary Nonpolyposis Colorectal Cancer	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000249.4(MLH1):c.85G>T (p.Ala29Ser) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.85G>T (p.Ala29Ser) AND not specified	ClinVar	Detail
NM_000249.4(MLH1):c.85G>T (p.Ala29Ser) AND Colorectal cancer, hereditary nonpolyposis, type 2	ClinVar	Detail
NM_000249.4(MLH1):c.85G>T (p.Ala29Ser) AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000249.4(MLH1):c.85G>T (p.Ala29Ser) AND not provided	ClinVar	Detail
NM_000249.3(MLH1):c.[-27C>A;85G>T] AND Lynch syndrome 1	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs63750656 dbSNP
Genome: hg19
Position: chr3:37,035,123-37,035,123
Variant Type: snv
Reference Allele: G
Alternative Allele: T

Genome browser