chr3:37035105:G>T Detail (hg19) (MLH1)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:37,035,105-37,035,105
hg38	chr3:36,993,614-36,993,614 View the variant detail on this assembly version.

HGVS

MLH1

Type	Transcript	Protein
RefSeq	NM_000249.3:c.67G>T	NP_000240.1:p.Glu23Ter
	NM_001258273.1:c.-566G>T
	NM_001258271.1:c.67G>T	NP_001245200.1:p.Glu23Ter
Ensemble	ENST00000231790.8:c.67G>T	ENST00000231790.8:p.Glu23Ter
	ENST00000536378.5:c.-566G>T
	ENST00000456676.7:c.67G>T	ENST00000456676.7:p.Glu23Ter
	ENST00000450420.6:c.67G>T	ENST00000450420.6:p.Glu23Ter
	ENST00000616768.6:c.67G>T	ENST00000616768.6:p.Glu23Ter
	ENST00000673673.2:c.67G>T	ENST00000673673.2:p.Glu23Ter
	ENST00000673715.1:c.67G>T	ENST00000673715.1:p.Glu23Ter
	ENST00000673899.1:c.67G>T	ENST00000673899.1:p.Glu23Ter
	ENST00000713802.1:c.67G>T	ENST00000713802.1:p.Glu23Ter

Summary

MGeND

Clinical significance	not provided
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

MLH1

Type	Database	ID	Link
Gene	MIM	120436	OMIM
	HGNC	7127	HGNC
	Ensembl	ENSG00000076242	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
not provided		intrahepatic bile duct carcinoma	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2013-09-05	reviewed by expert panel	Lynch syndrome	germline	Detail
Pathogenic	2019-07-02	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail
Pathogenic	2021-11-30	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2023-05-25	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
Pathogenic	2023-07-10	criteria provided, multiple submitters, no conflicts	Colorectal cancer, hereditary nonpolyposis, type 2	germline unknown	Detail
Pathogenic	2021-01-27	criteria provided, single submitter	Hereditary nonpolyposis colon cancer	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.121	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail
0.329	Hereditary Nonpolyposis Colorectal Cancer	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND Lynch syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND not provided	ClinVar	Detail
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND Colorectal cancer, hereditary nonpolyposis, type 2	ClinVar	Detail
NM_000249.4(MLH1):c.67G>T (p.Glu23Ter) AND Hereditary nonpolyposis colon cancer	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs63750823 dbSNP
Genome: hg19
Position: chr3:37,035,105-37,035,105
Variant Type: snv
Reference Allele: G
Alternative Allele: T

Genome browser