chr3:122003892:G>A Detail (hg19) (CASR)

Information

Genome

Assembly Position
hg19 chr3:122,003,892-122,003,892
hg38 chr3:122,285,045-122,285,045 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_001178065.1:c.3121G>A NP_001171536.1:p.Gly1041Ser
NM_000388.3:c.3091G>A NP_000379.2:p.Gly1031Ser
Ensemble ENST00000490131.7:c.2860G>A ENST00000490131.7:p.Gly954Ser
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Conflicting classifications of pathogenicity
Review star
Show details
Links
Type Database ID Link
Gene MIM 601199 OMIM
HGNC 1514 HGNC
Ensembl ENSG00000036828 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Conflicting interpretations of pathogenicity 2019-03-13 criteria provided, conflicting interpretations not specified germline Detail
Benign 2019-03-30 criteria provided, single submitter not provided germline Detail
Benign 2019-05-28 criteria provided, single submitter familial hypocalciuric hypercalcemia 1 unknown Detail
Likely benign 2023-12-18 criteria provided, single submitter autosomal dominant hypocalcemia 1,familial hypocalciuric hypercalcemia germline Detail
Likely benign 2023-12-18 criteria provided, single submitter autosomal dominant hypocalcemia 1,familial hypocalciuric hypercalcemia germline Detail
Benign 2023-03-02 criteria provided, single submitter Nephrolithiasis/nephrocalcinosis germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.588 Hypocalciuric hypercalcemia, familial, type 1 NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND not specified ClinVar Detail
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND not provided ClinVar Detail
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND Familial hypocalciuric hypercalcemia 1 ClinVar Detail
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND multiple conditions ClinVar Detail
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND multiple conditions ClinVar Detail
NM_000388.4(CASR):c.3091G>A (p.Gly1031Ser) AND Nephrolithiasis/nephrocalcinosis ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs142704083 dbSNP
Genome
hg19
Position
chr3:122,003,892-122,003,892
Variant Type
snv
Reference Allele
G
Alternative Allele
A
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
East Asian Chromosome Counts (ExAC)
8650
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
Chromosome Counts in All Race (ExAC)
121160
Allele Counts in All Race (ExAC)
27
Heterozygous Counts in All Race (ExAC)
25
Homozygous Counts in All Race (ExAC)
1
Allele Frequency in All Race (ExAC)
2.228458237041928E-4
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