chr18:48604721:A>T Detail (hg19) (SMAD4)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr18:48,604,721-48,604,721
hg38	chr18:51,078,351-51,078,351 View the variant detail on this assembly version.

HGVS

SMAD4

Type	Transcript	Protein
RefSeq	NM_005359.5:c.1543A>T	NP_005350.1:p.Arg515Ter
Ensemble	ENST00000398417.6:c.1543A>T	ENST00000398417.6:p.Arg515Ter
	ENST00000588745.5:c.1255A>T	ENST00000588745.5:p.Arg419Ter
	ENST00000593223.2:c.*1540A>T
	ENST00000342988.8:c.1543A>T	ENST00000342988.8:p.Arg515Ter
	ENST00000589941.2:c.1543A>T	ENST00000589941.2:p.Arg515Ter
	ENST00000588860.6:c.1543A>T	ENST00000588860.6:p.Arg515Ter
	ENST00000589076.6:c.1543A>T	ENST00000589076.6:p.Arg515Ter
	ENST00000590061.2:c.1543A>T	ENST00000590061.2:p.Arg515Ter
	ENST00000714261.1:c.1582A>T	ENST00000714261.1:p.Arg528Ter
	ENST00000714264.1:c.1624A>T	ENST00000714264.1:p.Arg542Ter
	ENST00000714266.1:c.1330A>T	ENST00000714266.1:p.Arg444Ter
	ENST00000714268.1:c.1513A>T	ENST00000714268.1:p.Arg505Ter
	ENST00000714269.1:c.1315A>T	ENST00000714269.1:p.Arg439Ter
	ENST00000714270.1:c.1621A>T	ENST00000714270.1:p.Arg541Ter
	ENST00000714272.1:c.1519A>T	ENST00000714272.1:p.Arg507Ter

Summary

MGeND

Clinical significance	not provided
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

SMAD4

Type	Database	ID	Link
Gene	MIM	600993	OMIM
	HGNC	6770	HGNC
	Ensembl	ENSG00000141646	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM14129	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
not provided		extrahepatic bile duct	not provided	MGS000040 (TMGS000095)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	1996-06-01	no assertion criteria provided	Carcinoma of pancreas	somatic	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.140	pancreatic carcinoma	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_005359.6(SMAD4):c.1543A>T (p.Arg515Ter) AND Carcinoma of pancreas	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs121912579 dbSNP
Genome: hg19
Position: chr18:48,604,721-48,604,721
Variant Type: snv
Reference Allele: A
Alternative Allele: T

Genome browser