chr18:48581234:C>T Detail (hg19) (SMAD4)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr18:48,581,234-48,581,234
hg38	chr18:51,054,864-51,054,864 View the variant detail on this assembly version.

HGVS

SMAD4

Type	Transcript	Protein
RefSeq	NM_005359.5:c.538C>T	NP_005350.1:p.Gln180Ter
Ensemble	ENST00000398417.6:c.538C>T	ENST00000398417.6:p.Gln180Ter
	ENST00000588745.5:c.538C>T	ENST00000588745.5:p.Gln180Ter
	ENST00000342988.8:c.538C>T	ENST00000342988.8:p.Gln180Ter
	ENST00000589941.2:c.538C>T	ENST00000589941.2:p.Gln180Ter
	ENST00000588860.6:c.538C>T	ENST00000588860.6:p.Gln180Ter
	ENST00000589076.6:c.538C>T	ENST00000589076.6:p.Gln180Ter
	ENST00000714261.1:c.577C>T	ENST00000714261.1:p.Gln193Ter
	ENST00000714264.1:c.538C>T	ENST00000714264.1:p.Gln180Ter
	ENST00000714266.1:c.455-3261C>T
	ENST00000714268.1:c.508C>T	ENST00000714268.1:p.Gln170Ter
	ENST00000714269.1:c.538C>T	ENST00000714269.1:p.Gln180Ter
	ENST00000590061.2:c.538C>T	ENST00000590061.2:p.Gln180Ter
	ENST00000714270.1:c.616C>T	ENST00000714270.1:p.Gln206Ter
	ENST00000714272.1:c.538C>T	ENST00000714272.1:p.Gln180Ter
	ENST00000593223.2:c.538C>T	ENST00000593223.2:p.Gln180Ter

Summary

MGeND

Clinical significance	Pathogenic
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
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Links

SMAD4

Type	Database	ID	Link
Gene	MIM	600993	OMIM
	HGNC	6770	HGNC
	Ensembl	ENSG00000141646	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
Pathogenic		Carcinoma of pancreas (disorder)	unknown	MGS000025 (TMGS000084)	Manabu Muto	Kyoto University

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2022-07-29	criteria provided, single submitter	juvenile polyposis syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.588	juvenile polyposis syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_005359.6(SMAD4):c.538C>T (p.Gln180Ter) AND Juvenile polyposis syndrome	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs377767332 dbSNP
Genome: hg19
Position: chr18:48,581,234-48,581,234
Variant Type: snv
Reference Allele: C
Alternative Allele: T

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