chr17:78087080:C>T Detail (hg19) (GAA)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr17:78,087,080-78,087,080
hg38	chr17:80,113,281-80,113,281 View the variant detail on this assembly version.

HGVS

GAA

Type	Transcript	Protein
RefSeq	NM_001079803.2:c.2104C>T	NP_001073271.1:p.Arg702Cys
	NM_001079804.2:c.2104C>T	NP_001073272.1:p.Arg702Cys
	NM_000152.4:c.2104C>T	NP_000143.2:p.Arg702Cys
Ensemble	ENST00000570803.6:c.2104C>T	ENST00000570803.6:p.Arg702Cys
	ENST00000390015.7:c.2104C>T	ENST00000390015.7:p.Arg702Cys
	ENST00000714062.1:c.1183C>T	ENST00000714062.1:p.Arg395Cys
	ENST00000714057.1:c.2104C>T	ENST00000714057.1:p.Arg702Cys
	ENST00000714054.1:c.1303C>T	ENST00000714054.1:p.Arg435Cys
	ENST00000577106.6:c.2104C>T	ENST00000577106.6:p.Arg702Cys
	ENST00000714058.1:c.2104C>T	ENST00000714058.1:p.Arg702Cys
	ENST00000714055.1:c.2104C>T	ENST00000714055.1:p.Arg702Cys
	ENST00000302262.8:c.2104C>T	ENST00000302262.8:p.Arg702Cys

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

GAA

Type	Database	ID	Link
Gene	MIM	606800	OMIM
	HGNC	4065	HGNC
	Ensembl	ENSG00000171298	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic Likely pathogenic	2023-12-27	criteria provided, multiple submitters, no conflicts	Glycogen storage disease, type II	germline unknown	Detail
Pathogenic	2023-12-11	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.499	Glycogen storage disease type II	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000152.5(GAA):c.2104C>T (p.Arg702Cys) AND Glycogen storage disease, type II	ClinVar	Detail
NM_000152.5(GAA):c.2104C>T (p.Arg702Cys) AND not provided	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs786204645 dbSNP
Genome: hg19
Position: chr17:78,087,080-78,087,080
Variant Type: snv
Reference Allele: C
Alternative Allele: T

Genome browser