chr17:38717896:T>C Detail (hg19) (CCR7)

Information

Genome

Assembly Position
hg19 chr17:38,717,896-38,717,896
hg38 chr17:40,561,644-40,561,644 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_001301714.1:c.11-2702A>G
NM_001838.3:c.11-2702A>G
Ensemble ENST00000246657.2:c.11-2702A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.035
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 600242 OMIM
HGNC 1608 HGNC
Ensembl ENSG00000126353 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv57739802 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.010 chronic lymphocytic leukemia After adjustment for multiple testing, we found a strong association between CLL... BeFree 19074885 Detail
0.006 chronic lymphocytic leukemia After adjustment for multiple testing, we found a strong association between CLL... BeFree 19074885 Detail
0.003 chronic lymphocytic leukemia After adjustment for multiple testing, we found a strong association between CLL... BeFree 19074885 Detail
0.005 chronic lymphocytic leukemia After adjustment for multiple testing, we found a strong association between CLL... BeFree 19074885 Detail
0.124 chronic lymphocytic leukemia After adjustment for multiple testing, we found a strong association between CLL... BeFree 19074885 Detail
Annotation

Annotations

DescrptionSourceLinks
After adjustment for multiple testing, we found a strong association between CLL risk and six geneti... DisGeNET Detail
After adjustment for multiple testing, we found a strong association between CLL risk and six geneti... DisGeNET Detail
After adjustment for multiple testing, we found a strong association between CLL risk and six geneti... DisGeNET Detail
After adjustment for multiple testing, we found a strong association between CLL risk and six geneti... DisGeNET Detail
After adjustment for multiple testing, we found a strong association between CLL risk and six geneti... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs3136687 dbSNP
Genome
hg19
Position
chr17:38,717,896-38,717,896
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs3136687
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.0347
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
581
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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