chr15:62396389:A>G Detail (hg19)

Information

Genome

Assembly Position
hg19 chr15:62,396,389-62,396,389
hg38 chr15:62,104,190-62,104,190 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.441
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 diabetes mellitus The diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 A allele associates with GSIR in... BeFree 21249489 Detail
<0.001 Diabetes We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD... BeFree 21249489 Detail
<0.001 diabetes mellitus We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD... BeFree 21249489 Detail
<0.001 diabetes mellitus We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD... BeFree 21249489 Detail
<0.001 Diabetes The diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 A allele associates with GSIR in... BeFree 21249489 Detail
<0.001 Diabetes We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD... BeFree 21249489 Detail
0.130 Diabetes Mellitus, Non-Insulin-Dependent [A genome-wide association study in the Japanese population identifies susceptib... GAD 20818381 Detail
<0.001 diabetes mellitus In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
0.009 diabetes mellitus In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
<0.001 diabetes mellitus In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
<0.001 Diabetes In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
0.002 Diabetes In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
<0.001 Diabetes In the Danish MONICA study four gene variants were significantly associated with... BeFree 23185617 Detail
Annotation

Annotations

DescrptionSourceLinks
The diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 A allele associates with GSIR in non-diabetic indivi... DisGeNET Detail
We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 variant... DisGeNET Detail
We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 variant... DisGeNET Detail
We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 variant... DisGeNET Detail
The diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 A allele associates with GSIR in non-diabetic indivi... DisGeNET Detail
We looked for potential associations between the diabetogenic VPS13C/C2CD4A/C2CD4B rs7172432 variant... DisGeNET Detail
[A genome-wide association study in the Japanese population identifies susceptibility loci for type ... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
In the Danish MONICA study four gene variants were significantly associated with incident CVD indepe... DisGeNET Detail
Gene
-
dbSNP
rs7172432 dbSNP
Genome
hg19
Position
chr15:62,396,389-62,396,389
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs7172432
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4411
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7392
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
Genome browser