chr14:73659500:A>G Detail (hg19) (PSEN1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr14:73,659,500-73,659,500
hg38	chr14:73,192,792-73,192,792 View the variant detail on this assembly version.

HGVS

PSEN1

Type	Transcript	Protein
RefSeq	NM_000021.3:c.697A>G	NP_000012.1:p.Met233Val
	NM_007318.2:c.697A>G	NP_015557.2:p.Met233Val
Ensemble	ENST00000700378.1:c.697A>G	ENST00000700378.1:p.Met233Val
	ENST00000700324.1:c.685A>G	ENST00000700324.1:p.Met229Val
	ENST00000700268.1:c.697A>G	ENST00000700268.1:p.Met233Val
	ENST00000700267.1:c.697A>G	ENST00000700267.1:p.Met233Val
	ENST00000700322.1:c.685A>G	ENST00000700322.1:p.Met229Val
	ENST00000700317.1:c.697A>G	ENST00000700317.1:p.Met233Val
	ENST00000324501.10:c.697A>G	ENST00000324501.10:p.Met233Val
	ENST00000700321.1:c.697A>G	ENST00000700321.1:p.Met233Val
	ENST00000700273.1:c.685A>G	ENST00000700273.1:p.Met229Val
	ENST00000700323.1:c.697A>G	ENST00000700323.1:p.Met233Val
	ENST00000557293.6:c.649+48A>G
	ENST00000700313.1:c.685A>G	ENST00000700313.1:p.Met229Val
	ENST00000700271.1:c.685A>G	ENST00000700271.1:p.Met229Val
	ENST00000394164.5:c.685A>G	ENST00000394164.5:p.Met229Val
	ENST00000700265.1:c.685A>G	ENST00000700265.1:p.Met229Val
	ENST00000700320.1:c.697A>G	ENST00000700320.1:p.Met233Val
	ENST00000700469.1:c.685A>G	ENST00000700469.1:p.Met229Val
	ENST00000700307.1:c.697A>G	ENST00000700307.1:p.Met233Val
	ENST00000700389.1:c.685A>G	ENST00000700389.1:p.Met229Val
	ENST00000357710.8:c.685A>G	ENST00000357710.8:p.Met229Val
	ENST00000700468.1:c.685A>G	ENST00000700468.1:p.Met229Val
	ENST00000700437.1:c.448A>G	ENST00000700437.1:p.Met150Val
	ENST00000554131.6:c.697A>G	ENST00000554131.6:p.Met233Val
	ENST00000557511.5:c.697A>G	ENST00000557511.5:p.Met233Val
	ENST00000700306.1:c.697A>G	ENST00000700306.1:p.Met233Val
	ENST00000553599.6:c.685A>G	ENST00000553599.6:p.Met229Val
	ENST00000556951.6:c.685A>G	ENST00000556951.6:p.Met229Val
	ENST00000700375.1:c.697A>G	ENST00000700375.1:p.Met233Val
	ENST00000700312.1:c.448A>G	ENST00000700312.1:p.Met150Val
	ENST00000700269.1:c.697A>G	ENST00000700269.1:p.Met233Val

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

PSEN1

Type	Database	ID	Link
Gene	MIM	104311	OMIM
	HGNC	9508	HGNC
	Ensembl	ENSG00000080815	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM957594	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic Likely pathogenic	2020-06-08	criteria provided, multiple submitters, no conflicts	Alzheimer disease 3	germline unknown	Detail
Pathogenic	2022-03-25	criteria provided, single submitter	not provided	unknown	Detail
Pathogenic	2018-08-18	criteria provided, single submitter	Alzheimer disease 3,frontotemporal dementia,Pick disease,Acne inversa, familial, 3	germline	Detail
Pathogenic	2018-08-18	criteria provided, single submitter	Alzheimer disease 3,frontotemporal dementia,Pick disease,Acne inversa, familial, 3	germline	Detail
Pathogenic	2018-08-18	criteria provided, single submitter	Alzheimer disease 3,frontotemporal dementia,Pick disease,Acne inversa, familial, 3	germline	Detail
Pathogenic	2018-08-18	criteria provided, single submitter	Alzheimer disease 3,frontotemporal dementia,Pick disease,Acne inversa, familial, 3	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.320	Alzheimer disease, familial, type 3	NA	CLINVAR		Detail
0.015	Familial Alzheimer Disease (FAD)	Identification of PSEN1 mutations p.M233L and p.R352C in Han Chinese families wi...	BeFree	25595498	Detail

Annotation

Annotations

Descrption	Source	Links
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND Alzheimer disease 3	ClinVar	Detail
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND not provided	ClinVar	Detail
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND multiple conditions	ClinVar	Detail
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND multiple conditions	ClinVar	Detail
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND multiple conditions	ClinVar	Detail
NM_000021.4(PSEN1):c.697A>G (p.Met233Val) AND multiple conditions	ClinVar	Detail
NA	DisGeNET	Detail
Identification of PSEN1 mutations p.M233L and p.R352C in Han Chinese families with early-onset famil...	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs63751287 dbSNP
Genome: hg19
Position: chr14:73,659,500-73,659,500
Variant Type: snv
Reference Allele: A
Alternative Allele: G

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