chr12:112915455:T>A Detail (hg19) (PTPN11)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr12:112,915,455-112,915,455
hg38	chr12:112,477,651-112,477,651 View the variant detail on this assembly version.

HGVS

PTPN11

Type	Transcript	Protein
RefSeq	NM_001330437.1:c.854T>A	NP_001317366.1:p.Phe285Tyr
	NM_080601.1:c.854T>A	NP_542168.1:p.Phe285Tyr
	NM_002834.3:c.854T>A	NP_002825.3:p.Phe285Tyr
Ensemble	ENST00000635625.1:c.854T>A	ENST00000635625.1:p.Phe285Tyr
	ENST00000639857.2:c.854T>A	ENST00000639857.2:p.Phe285Tyr
	ENST00000690210.1:c.854T>A	ENST00000690210.1:p.Phe285Tyr
	ENST00000392597.5:c.854T>A	ENST00000392597.5:p.Phe285Tyr
	ENST00000688597.1:c.854T>A	ENST00000688597.1:p.Phe285Tyr
	ENST00000351677.7:c.854T>A	ENST00000351677.7:p.Phe285Tyr
	ENST00000687906.1:c.740T>A	ENST00000687906.1:p.Phe247Tyr

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

PTPN11

Type	Database	ID	Link
Gene	MIM	176876	OMIM
	HGNC	9644	HGNC
	Ensembl	ENSG00000179295	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely pathogenic	2023-06-15	criteria provided, single submitter	not provided	germline	Detail
Uncertain significance		no assertion criteria provided	Noonan syndrome	paternal	Detail
Likely pathogenic	2021-06-07	criteria provided, single submitter	RASopathy	germline	Detail
Pathogenic	2018-08-03	criteria provided, single submitter		germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.120	Turner Syndrome, Male	NA	CLINVAR		Detail
0.694	Noonan syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_002834.5(PTPN11):c.854T>A (p.Phe285Tyr) AND not provided	ClinVar	Detail
NM_002834.5(PTPN11):c.854T>A (p.Phe285Tyr) AND Noonan syndrome	ClinVar	Detail
NM_002834.5(PTPN11):c.854T>A (p.Phe285Tyr) AND RASopathy	ClinVar	Detail
NM_002834.5(PTPN11):c.854T>A (p.Phe285Tyr) AND Cardiovascular phenotype	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs121918463 dbSNP
Genome: hg19
Position: chr12:112,915,455-112,915,455
Variant Type: snv
Reference Allele: T
Alternative Allele: A

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