chr11:2606494:A>G Detail (hg19) (KCNQ1)

Information

Genome

Assembly Position
hg19 chr11:2,606,494-2,606,494
hg38 chr11:2,585,264-2,585,264 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000218.2:c.1085A>G NP_000209.2:p.Lys362Arg
NM_181798.1:c.704A>G NP_861463.1:p.Lys235Arg
Ensemble ENST00000496887.7:c.771+1719A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Conflicting classifications of pathogenicity
Review star
Show details
Links
Type Database ID Link
Gene MIM 607542 OMIM
HGNC 6294 HGNC
Ensembl ENSG00000053918 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic Likely pathogenic 2024-01-10 criteria provided, multiple submitters, no conflicts long QT syndrome germline Detail
Likely pathogenic 2020-07-03 criteria provided, single submitter Congenital long QT syndrome germline Detail
Pathogenic Likely pathogenic 2024-01-01 criteria provided, multiple submitters, no conflicts not provided germline Detail
Likely pathogenic criteria provided, single submitter polyhydramnios germline Detail
Pathogenic 2018-10-31 criteria provided, single submitter Short QT syndrome type 2,Jervell and Lange-Nielsen syndrome 1,Beckwith-Wiedemann syndrome,long QT syndrome 1,Atrial fibrillation, familial, 3 unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Short QT syndrome type 2,Jervell and Lange-Nielsen syndrome 1,Beckwith-Wiedemann syndrome,long QT syndrome 1,Atrial fibrillation, familial, 3 unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Short QT syndrome type 2,Jervell and Lange-Nielsen syndrome 1,Beckwith-Wiedemann syndrome,long QT syndrome 1,Atrial fibrillation, familial, 3 unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Short QT syndrome type 2,Jervell and Lange-Nielsen syndrome 1,Beckwith-Wiedemann syndrome,long QT syndrome 1,Atrial fibrillation, familial, 3 unknown Detail
Pathogenic 2018-10-31 criteria provided, single submitter Short QT syndrome type 2,Jervell and Lange-Nielsen syndrome 1,Beckwith-Wiedemann syndrome,long QT syndrome 1,Atrial fibrillation, familial, 3 unknown Detail
Likely pathogenic 2023-08-24 criteria provided, multiple submitters, no conflicts long QT syndrome 1 germline unknown Detail
Likely pathogenic 2023-07-28 criteria provided, single submitter Cardiac arrhythmia germline Detail
Uncertain significance 2022-10-31 criteria provided, single submitter germline Detail
Likely pathogenic 2019-11-27 criteria provided, single submitter Atrial fibrillation, familial, 3,long QT syndrome 1,Short QT syndrome type 2 germline Detail
Likely pathogenic 2019-11-27 criteria provided, single submitter Atrial fibrillation, familial, 3,long QT syndrome 1,Short QT syndrome type 2 germline Detail
Likely pathogenic 2019-11-27 criteria provided, single submitter Atrial fibrillation, familial, 3,long QT syndrome 1,Short QT syndrome type 2 germline Detail
Likely pathogenic criteria provided, single submitter KCNQ1-related disorder germline Detail
Likely pathogenic 2023-07-18 criteria provided, single submitter Short QT syndrome type 2,Atrial fibrillation, familial, 3,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1 germline Detail
Likely pathogenic 2023-07-18 criteria provided, single submitter Short QT syndrome type 2,Atrial fibrillation, familial, 3,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1 germline Detail
Likely pathogenic 2023-07-18 criteria provided, single submitter Short QT syndrome type 2,Atrial fibrillation, familial, 3,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1 germline Detail
Likely pathogenic 2023-07-18 criteria provided, single submitter Short QT syndrome type 2,Atrial fibrillation, familial, 3,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1 germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.573 Romano-Ward Syndrome A cardiac channel gene screen for LQTS-causing mutations in KCNQ1 (LQT1), KCNH2 ... UNIPROT 15840476 Detail
0.133 Congenital long QT syndrome NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND Long QT syndrome ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND Congenital long QT syndrome ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND not provided ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND Long QT syndrome 1 ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND Cardiac arrhythmia ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND Cardiovascular phenotype ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND KCNQ1-related disorder ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
NM_000218.3(KCNQ1):c.1085A>G (p.Lys362Arg) AND multiple conditions ClinVar Detail
A cardiac channel gene screen for LQTS-causing mutations in KCNQ1 (LQT1), KCNH2 (LQT2), SCN5A (LQT3)... DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs12720458 dbSNP
Genome
hg19
Position
chr11:2,606,494-2,606,494
Variant Type
snv
Reference Allele
A
Alternative Allele
G
East Asian Chromosome Counts (ExAC)
8646
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121050
Allele Counts in All Race (ExAC)
2
Heterozygous Counts in All Race (ExAC)
2
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
1.6522098306484923E-5
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