chr11:2592575:T>C Detail (hg19) (KCNQ1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr11:2,592,575-2,592,575
hg38	chr11:2,571,345-2,571,345 View the variant detail on this assembly version.

HGVS

KCNQ1

Type	Transcript	Protein
RefSeq	NM_000218.2:c.625T>C	NP_000209.2:p.Ser209Pro
	NM_181798.1:c.244T>C	NP_861463.1:p.Ser82Pro
Ensemble	ENST00000155840.12:c.625T>C	ENST00000155840.12:p.Ser209Pro
	ENST00000496887.7:c.364T>C	ENST00000496887.7:p.Ser122Pro
	ENST00000335475.6:c.244T>C	ENST00000335475.6:p.Ser82Pro
	ENST00000646564.2:c.478-12090T>C
	ENST00000713725.1:c.625T>C	ENST00000713725.1:p.Ser209Pro

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
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Links

KCNQ1

Type	Database	ID	Link
Gene	MIM	607542	OMIM
	HGNC	6294	HGNC
	Ensembl	ENSG00000053918	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
not provided		no assertion provided	atrial fibrillation	germline	Detail
Pathogenic	2009-08-01	no assertion criteria provided	Atrial fibrillation, familial, 3	germline	Detail
Pathogenic	2021-04-23	criteria provided, single submitter	long QT syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.360	Atrial fibrillation, familial, 3	NA	CLINVAR		Detail
0.120	Atrial Fibrillation Adverse Event	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000218.3(KCNQ1):c.625T>C (p.Ser209Pro) AND Atrial fibrillation	ClinVar	Detail
NM_000218.3(KCNQ1):c.625T>C (p.Ser209Pro) AND Atrial fibrillation, familial, 3	ClinVar	Detail
NM_000218.3(KCNQ1):c.625T>C (p.Ser209Pro) AND Long QT syndrome	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs199472705 dbSNP
Genome: hg19
Position: chr11:2,592,575-2,592,575
Variant Type: snv
Reference Allele: T
Alternative Allele: C

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