chr11:108164206:T>C Detail (hg19) (ATM)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr11:108,164,206-108,164,206
hg38	chr11:108,293,479-108,293,479 View the variant detail on this assembly version.

HGVS

ATM

Type	Transcript	Protein
RefSeq	NM_000051.3:c.4776+2T>C
	NM_001351834.1:c.4776+2T>C
Ensemble	ENST00000531525.3:c.4437-1448T>C
	ENST00000278616.10:c.4776+2T>C
	ENST00000452508.7:c.4776+2T>C
	ENST00000601453.3:c.4776+2T>C
	ENST00000675843.1:c.4776+2T>C
	ENST00000713844.1:c.4776+2T>C

Summary

MGeND

Clinical significance	Pathogenic
Variant entry	3
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

ATM

Type	Database	ID	Link
Gene	MIM	607585	OMIM
	HGNC	795	HGNC
	Ensembl	ENSG00000149311	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
Pathogenic		other	germline	MGS000001 (TMGS000138)	Kenjiro Kosaki	Keio University
Pathogenic	2020/04/20	appendix	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan
Pathogenic	2020/04/20	bronchus or lung, unspecified	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2024-01-09	criteria provided, multiple submitters, no conflicts	Ataxia-telangiectasia syndrome	germline unknown	Detail
Pathogenic	2023-02-07	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2021-12-27	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail
Pathogenic Likely pathogenic	2024-01-24	criteria provided, multiple submitters, no conflicts	Familial cancer of breast	unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.709	ataxia telangiectasia	NA	CLINVAR		Detail
0.120	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000051.4(ATM):c.4776+2T>C AND Ataxia-telangiectasia syndrome	ClinVar	Detail
NM_000051.4(ATM):c.4776+2T>C AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000051.4(ATM):c.4776+2T>C AND not provided	ClinVar	Detail
NM_000051.4(ATM):c.4776+2T>C AND Familial cancer of breast	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs587781927 dbSNP
Genome: hg19
Position: chr11:108,164,206-108,164,206
Variant Type: snv
Reference Allele: T
Alternative Allele: C

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