chr10:115438204:C>A Detail (hg19)

Information

Genome

Assembly Position
hg19 chr10:115,438,204-115,438,204
hg38 chr10:113,678,445-113,678,445 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.495
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.002 Carcinoma of lung Meta-analysis results showed positive associations between heterozygote (A/G) of... BeFree 23315881 Detail
0.014 Malignant neoplasm of lung Meta-analysis results showed positive associations between heterozygote (A/G) of... BeFree 23315881 Detail
Annotation

Annotations

DescrptionSourceLinks
Meta-analysis results showed positive associations between heterozygote (A/G) of rs507879 in the CAS... DisGeNET Detail
Meta-analysis results showed positive associations between heterozygote (A/G) of rs507879 in the CAS... DisGeNET Detail
Gene
-
dbSNP
rs12415607 dbSNP
Genome
hg19
Position
chr10:115,438,204-115,438,204
Variant Type
snv
Reference Allele
C
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs12415607
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4946
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
8290
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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