chr1:247588469:T>C Detail (hg19) (NLRP3)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr1:247,588,469-247,588,469
hg38	chr1:247,425,167-247,425,167 View the variant detail on this assembly version.

HGVS

NLRP3

Type	Transcript	Protein
RefSeq	NM_001079821.2:c.1718T>C	NP_001073289.1:p.Phe573Ser
	NM_001127462.2:c.1718T>C	NP_001120934.1:p.Phe573Ser
	NM_001243133.1:c.1718T>C	NP_001230062.1:p.Phe573Ser
	NM_004895.4:c.1718T>C	NP_004886.3:p.Phe573Ser
	NM_183395.2:c.1718T>C	NP_899632.1:p.Phe573Ser
Ensemble	ENST00000697408.2:c.1718T>C	ENST00000697408.2:p.Phe573Ser
	ENST00000391827.3:c.1718T>C	ENST00000391827.3:p.Phe573Ser
	ENST00000391828.8:c.1718T>C	ENST00000391828.8:p.Phe573Ser
	ENST00000474792.2:c.1718T>C	ENST00000474792.2:p.Phe573Ser
	ENST00000336119.8:c.1718T>C	ENST00000336119.8:p.Phe573Ser
	ENST00000697350.1:c.1718T>C	ENST00000697350.1:p.Phe573Ser
	ENST00000643234.2:c.1718T>C	ENST00000643234.2:p.Phe573Ser
	ENST00000348069.7:c.1718T>C	ENST00000348069.7:p.Phe573Ser
	ENST00000366496.7:c.1718T>C	ENST00000366496.7:p.Phe573Ser

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

NLRP3

Type	Database	ID	Link
Gene	MIM	606416	OMIM
	HGNC	16400	HGNC
	Ensembl	ENSG00000162711	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2002-07-01	no assertion criteria provided	Chronic infantile neurological, cutaneous and articular syndrome	germline	Detail
not provided		no assertion provided	familial cold autoinflammatory syndrome 1	not provided	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.567	Familial cold urticaria	NA	CLINVAR		Detail
0.450	Chronic Infantile Neurological, Cutaneous, and Articular Syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_001243133.2(NLRP3):c.1718T>C (p.Phe573Ser) AND Chronic infantile neurological, cutaneous and arti...	ClinVar	Detail
NM_001243133.2(NLRP3):c.1718T>C (p.Phe573Ser) AND Familial cold autoinflammatory syndrome 1	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs121908152 dbSNP
Genome: hg19
Position: chr1:247,588,469-247,588,469
Variant Type: snv
Reference Allele: T
Alternative Allele: C

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