chr1:162746131:C>T Detail (hg19) (DDR2)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:162,746,131-162,746,131 |
| hg38 | chr1:162,776,341-162,776,341 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_006182.2:c.2254C>T | NP_006173.2:p.Arg752Cys |
| NM_001014796.1:c.2254C>T | NP_001014796.1:p.Arg752Cys | |
| Ensemble | ENST00000367921.8:c.2254C>T | ENST00000367921.8:p.Arg752Cys |
Summary
MGeND
| Clinical significance |
not provided
|
| Variant entry | 1 |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance |
Pathogenic
|
| Review star |  |
| Show details | |
Disease area statistics
MGeND
| Clinical significance | Last evaluated | Condition | Origin | Submission ID | Submitter | Institute | Citation | Comment | Image |
|---|---|---|---|---|---|---|---|---|---|
|
not provided
|
ill-defined sites within the digestive system |
not provided
|
MGS000042
(TMGS000093) |
Hitoshi Nakagama | National Cancer Center Japan |
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
|
Pathogenic
|
2010-06-01 | no assertion criteria provided | Spondyloepimetaphyseal dysplasia-short limb-abnormal calcification syndrome |
germline
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.480 | spondylometaepiphyseal dysplasia, short limb-hand type | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_006182.4(DDR2):c.2254C>T (p.Arg752Cys) AND Spondyloepimetaphyseal dysplasia-short limb-abnormal c... | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs121964863 dbSNP
- Genome
- hg19
- Position
- chr1:162,746,131-162,746,131
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Chromosome Counts (ExAC)
- 8652
- East Asian Allele Counts (ExAC)
- 0
- East Asian Heterozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 0.0
- Chromosome Counts in All Race (ExAC)
- 121318
- Allele Counts in All Race (ExAC)
- 1
- Heterozygous Counts in All Race (ExAC)
- 1
- Homozygous Counts in All Race (ExAC)
- 0
- Allele Frequency in All Race (ExAC)
- 8.24279991427488E-6
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