chr1:159679913:G>T Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:159,679,913-159,679,913 |
| hg38 | chr1:159,710,123-159,710,123 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.135 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Malignant tumor of colon | The CRP rs1205 AA genotype was associated with an increased risk of colon cancer... | BeFree | 20949557 | Detail |
| <0.001 | colon carcinoma | The CRP rs1205 AA genotype was associated with an increased risk of colon cancer... | BeFree | 20949557 | Detail |
| 0.025 | Senile Plaques | In multivariate analyses (age- and APOE-adjusted), non-neuritic SP were associat... | BeFree | 21831326 | Detail |
| <0.001 | Cerebral Small Vessel Diseases | In a case-control design, 1,669 patients with ischemic stroke due to large-arter... | BeFree | 20733302 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| The CRP rs1205 AA genotype was associated with an increased risk of colon cancer (OR 1.3, 95%CI 1.1-... | DisGeNET | Detail |
| The CRP rs1205 AA genotype was associated with an increased risk of colon cancer (OR 1.3, 95%CI 1.1-... | DisGeNET | Detail |
| In multivariate analyses (age- and APOE-adjusted), non-neuritic SP were associated with the high-CRP... | DisGeNET | Detail |
| In a case-control design, 1,669 patients with ischemic stroke due to large-artery atherosclerosis, c... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs3093075 dbSNP
- Genome
- hg19
- Position
- chr1:159,679,913-159,679,913
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs3093075
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1347
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2257
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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