chr6:51959901:GT> Detail (hg38) (PKHD1)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:51,824,699-51,824,700 |
| hg38 | chr6:51,959,901-51,959,902 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_170724.2:c.5876_5877delAC | NP_733842.2:p.Thr1960LysfsTer9 |
| NM_138694.3:c.5876_5877delAC | NP_619639.3:p.Thr1960LysfsTer9 | |
| Ensemble | ENST00000340994.4:c.5876_5877delAC | ENST00000340994.4:p.Thr1960LysfsTer9 |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.673 | autosomal recessive polycystic kidney disease | NA | CLINVAR | Detail |
Annotation
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- Genome
- hg38
- Position
- chr6:51,959,901-51,959,902
- Variant Type
- snv
- Reference Allele
- GT
- Alternative Allele
- -
- East Asian Chromosome Counts (ExAC)
- 8644
- East Asian Allele Counts (ExAC)
- 0
- East Asian Heterozygous Counts (ExAC)
- 0
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 0.0
- Chromosome Counts in All Race (ExAC)
- 121286
- Allele Counts in All Race (ExAC)
- 1
- Heterozygous Counts in All Race (ExAC)
- 1
- Homozygous Counts in All Race (ExAC)
- 0
- Allele Frequency in All Race (ExAC)
- 8.244974687927709E-6
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