chr16:68829788:T> Detail (hg38) (CDH1)

Information

Genome

Assembly Position
hg19 chr16:68,863,691-68,863,691 
hg38 chr16:68,829,788-68,829,788

HGVS

Type Transcript Protein
RefSeq NM_001317184.1:c.2430delT NP_001304113.1:p.Phe810LeufsTer6
NM_001317186.1:c.2430delT NP_001304115.1:p.Phe810LeufsTer6
NM_004360.4:c.2430delT NP_004351.1:p.Phe810LeufsTer6
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 192090 OMIM
HGNC 1748 HGNC
Ensembl ENSG00000039068 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM6968413 COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2024-01-05 criteria provided, multiple submitters, no conflicts Hereditary cancer-predisposing syndrome germline Detail
Pathogenic Likely pathogenic 2023-07-25 criteria provided, multiple submitters, no conflicts Hereditary diffuse gastric adenocarcinoma germline unknown Detail
Pathogenic 2018-04-30 criteria provided, single submitter not provided germline Detail
Pathogenic 2023-08-29 reviewed by expert panel CDH1-related diffuse gastric and lobular breast cancer syndrome germline Detail
Pathogenic 2023-02-22 criteria provided, single submitter Familial cancer of breast unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.123 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_004360.5(CDH1):c.2430del (p.Phe810fs) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_004360.5(CDH1):c.2430del (p.Phe810fs) AND Hereditary diffuse gastric adenocarcinoma ClinVar Detail
NM_004360.5(CDH1):c.2430del (p.Phe810fs) AND not provided ClinVar Detail
NM_004360.5(CDH1):c.2430del (p.Phe810fs) AND CDH1-related diffuse gastric and lobular breast cancer ... ClinVar Detail
NM_004360.5(CDH1):c.2430del (p.Phe810fs) AND Familial cancer of breast ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs786203752 dbSNP
Genome
hg38
Position
chr16:68,829,788-68,829,788
Variant Type
snv
Reference Allele
T
Alternative Allele
-
Genome browser