chr12:47973423:GGCC> Detail (hg38) (COL2A1)

Information

Genome

Assembly Position
hg19 chr12:48,367,206-48,367,209 
hg38 chr12:47,973,423-47,973,426

HGVS

Type Transcript Protein
RefSeq NM_033150.2:c.4238_4241delGGCC NP_149162.2:p.Pro1414SerfsTer?
NM_001844.4:c.4445_4448delGGCC NP_001835.3:p.Pro1483SerfsTer30
Ensemble ENST00000337299.7:c.4238_4241delGGCC ENST00000337299.7:p.Pro1414SerfsTer?
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 120140 OMIM
HGNC 2200 HGNC
Ensembl ENSG00000139219 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2015-02-05 criteria provided, single submitter not provided germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.561 Platyspondylic Lethal Skeletal Dysplasia, Torrance Type NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_001844.5(COL2A1):c.4447_4450del (p.Pro1483fs) AND not provided ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs794727761 dbSNP
Genome
hg38
Position
chr12:47,973,423-47,973,426
Variant Type
snv
Reference Allele
GGCC
Alternative Allele
-
Genome browser