chr6:51612858:A> Detail (hg19) (PKHD1)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:51,612,858-51,612,858 |
| hg38 | chr6:51,748,060-51,748,060 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_170724.2:c.9556delT | NP_733842.2:p.Ser3187LeufsTer33 |
| NM_138694.3:c.9556delT | NP_619639.3:p.Ser3187LeufsTer33 | |
| Ensemble | ENST00000340994.4:c.9556delT | ENST00000340994.4:p.Ser3187LeufsTer33 |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
ClinVar
| Clinical Significance |
Pathogenic
Likely pathogenic
|
| Review star |  |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
|
Pathogenic
Likely pathogenic
|
2022-08-21 | criteria provided, multiple submitters, no conflicts | autosomal recessive polycystic kidney disease |
germline
|
Detail |
|
Pathogenic
|
2018-03-29 | criteria provided, multiple submitters, no conflicts | not provided |
germline
|
Detail |
|
Likely pathogenic
|
2023-07-11 | criteria provided, multiple submitters, no conflicts | polycystic kidney disease 4 |
germline
unknown
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.673 | autosomal recessive polycystic kidney disease | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_138694.4(PKHD1):c.9559del (p.Ser3187fs) AND Autosomal recessive polycystic kidney disease | ClinVar | Detail |
| NM_138694.4(PKHD1):c.9559del (p.Ser3187fs) AND not provided | ClinVar | Detail |
| NM_138694.4(PKHD1):c.9559del (p.Ser3187fs) AND Polycystic kidney disease 4 | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs797045101 dbSNP
- Genome
- hg19
- Position
- chr6:51,612,858-51,612,858
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- -
Genome browser