chr10:89720749:C> Detail (hg19) (PTEN)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr10:89,720,749-89,720,749
hg38	chr10:87,960,992-87,960,992

HGVS

PTEN

Type	Transcript	Protein
RefSeq	NM_001304718.1:c.900delC	NP_001291647.1:p.Ile300MetfsTer7
	NM_000314.6:c.900delC	NP_000305.3:p.Ile300MetfsTer7
	NM_001304717.2:c.900delC	NP_001291646.2:p.Ile300MetfsTer7
Ensemble	ENST00000472832.3:c.900delC	ENST00000472832.3:p.Ile300MetfsTer7
	ENST00000700021.1:c.855delC	ENST00000700021.1:p.Ile285MetfsTer7
	ENST00000713839.1:c.993delC	ENST00000713839.1:p.Ile331MetfsTer7
	ENST00000700029.2:c.993delC	ENST00000700029.2:p.Ile331MetfsTer7
	ENST00000371953.8:c.900delC	ENST00000371953.8:p.Ile300MetfsTer7
	ENST00000688308.1:c.900delC	ENST00000688308.1:p.Ile300MetfsTer7

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
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Links

PTEN

Type	Database	ID	Link
Gene	MIM	601728	OMIM
	HGNC	9588	HGNC
	Ensembl	ENSG00000171862	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM921143	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2022-02-02	criteria provided, multiple submitters, no conflicts	macrocephaly-autism syndrome	germline	Detail
Pathogenic	2017-02-20	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2017-08-30	criteria provided, single submitter	PTEN hamartoma tumor syndrome	germline	Detail
Pathogenic	2020-11-23	criteria provided, single submitter	not provided	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.560	MACROCEPHALY/AUTISM SYNDROME	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000314.8(PTEN):c.900del (p.Ile300fs) AND Macrocephaly-autism syndrome	ClinVar	Detail
NM_000314.8(PTEN):c.900del (p.Ile300fs) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000314.8(PTEN):c.900del (p.Ile300fs) AND PTEN hamartoma tumor syndrome	ClinVar	Detail
NM_000314.8(PTEN):c.900del (p.Ile300fs) AND not provided	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs797045904 dbSNP
Genome: hg19
Position: chr10:89,720,749-89,720,749
Variant Type: snv
Reference Allele: C
Alternative Allele: -

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