ENST00000539522.2 CCDC42
Information
- Transcript ID
- ENST00000539522.2
- Genome
- hg38
- Position
- chr17:8,729,950-8,744,787
- Strand
- -
- CDS length
- 729
- Amino acid length
- 243
- Gene symbol
- CCDC42
- Gene type
- protein-coding
- Gene description
- coiled-coil domain containing 42
- Gene Entrez Gene ID
- 146849
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 6 | 8,729,950 | 8,730,207 |
| 5 | 8,735,096 | 8,735,254 |
| 4 | 8,741,474 | 8,741,671 |
| 3 | 8,743,626 | 8,743,730 |
| 2 | 8,744,079 | 8,744,184 |
| 1 | 8,744,527 | 8,744,787 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 6 | CDS | 8,730,130 | 8,730,207 |
| 5 | CDS | 8,735,096 | 8,735,254 |
| 4 | CDS | 8,741,474 | 8,741,671 |
| 3 | CDS | 8,743,626 | 8,743,730 |
| 2 | CDS | 8,744,079 | 8,744,184 |
| 1 | CDS | 8,744,527 | 8,744,609 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 8,633,268 | 8,648,105 | Link |
CDS sequence
ATGAGTCTGGGCATCATGGAAGAGGAAGACCTGGCCGAGTACTTCCGGCTGCAGTATGGGGAGCGGCTGCTGCAGATGCTCCAGAAACTCCCCAATGTTGAGGGGGCGTCGGAGTCCCCATCCATCTGGCTACTGGAGAAGAAAAAGGAGACAGAAATCATGCATCAAACTATGGTGCAGAAGAAGAAGATGTTTCAGCGCAGAATGGAAACCCTGAACCTGCGCTGGGAGGAACTGGGCGTTAAGGAAGCCCAACTGAAGGCTCACATCCAGAAGTCTGAGCAGTTCATCCAGGAGAACGACCAGAAACGGATCCGCGCCATGAAGAAAGCCAACAAGGAGCGAGAACTCAAGTGCCAGCACATGCAGGAGCTGACCAAGCGCAAGCAGGAGATGGTGGCGCTGCGGCTGGAGCACCAGCGGCTGAGCGCCAAGCTGAAGGACTACTACATCTTCAACAAGTACCTAGAGAAGGTGGTGGAGAACTCCGAGGAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCTGCTTGGCACCATTAAGATGGCCACGCTGAACCTCTTCCAGATCGTGAGCAAGCACCTGAAGGAGGTGACTGAGGTGGCACTGGAGGACACCCACAAGCAGCTGGACATGATCCAGCAATTTATCCAAGACCGGTCGGACATCTGGGCAGAGGTGAAAAAGAAGGAACAACAGCGAGTCCGGATTTAA
Amino sequence
MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQKKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRSDIWAEVKKKEQQRVRI*