ENST00000535986.2 SMCO2

Information
Transcript ID
ENST00000535986.2
Genome
hg38
Position
chr12:27,446,736-27,502,185
Strand
+
CDS length
1,032
Amino acid length
344
Gene symbol
SMCO2
Gene type
protein-coding
Gene description
single-pass membrane protein with coiled-coil domains 2
Gene Entrez Gene ID
341346
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 27,446,736 27,446,825
2 27,470,622 27,470,765
3 27,472,776 27,472,875
4 27,474,786 27,474,913
5 27,475,582 27,475,731
6 27,488,460 27,488,547
7 27,494,300 27,494,356
8 27,495,680 27,495,855
9 27,501,923 27,502,185
CDS
Exon number Type Start Stop
2 CDS 27,470,632 27,470,765
3 CDS 27,472,776 27,472,875
4 CDS 27,474,786 27,474,913
5 CDS 27,475,582 27,475,731
6 CDS 27,488,460 27,488,547
7 CDS 27,494,300 27,494,356
8 CDS 27,495,680 27,495,855
9 CDS 27,501,923 27,502,121
Other genome
Genome Chromosome Start End Links
hg19 chr12 27,599,669 27,655,118 Link
CDS sequence
ATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGACTAAGAAAAACAATGGCTTTTTCCAAAAGCTCAATGTGACTGAAGGTGCAATGCAGGATTTGCTAAAGGAAATTATCAAAGTGGACCACATCTTAGACAGATCGGATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGACTTCCTTCACAAGGGTATGTTGGAGCTAGAGGCTGAGCATGACCAGGACCTGAGTAAACAGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCTCCTTGAACTGTGTCTGAAGGGCATGTTCCTCAAGCTAAACTACTGGAACACAAAGATAGGTCTCCAGGTGAAAGAACTTGGAGCTGATTACATAGACGGAACGGAGAAAATTGACAATATTATTAAAAAAATAAATGTAACAGAAAACACAGTGAAGAGCTTATTAAAAGACATGCTGACCCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATGGAAACGTGCACTGAGGATTTTCATCATGTTTGATGTCCTCACCGTCACTGGACTTTTATGTTACATACTATTTTTTGGTGCTACATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGGAAGTGGAAGCCTTGTTACCCTCCTAA
Amino sequence
MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSENPQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELCLKGMFLKLNYWNTKIGLQVKELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS*