ENST00000571800.5 SCIMP
Information
- Transcript ID
- ENST00000571800.5
- Genome
- hg38
- Position
- chr17:5,213,012-5,234,823
- Strand
- -
- CDS length
- 372
- Amino acid length
- 124
- Gene symbol
- SCIMP
- Gene type
- protein-coding
- Gene description
- SLP adaptor and CSK interacting membrane protein
- Gene Entrez Gene ID
- 388325
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 5,213,012 | 5,214,836 |
| 4 | 5,214,925 | 5,214,998 |
| 3 | 5,221,287 | 5,221,350 |
| 2 | 5,223,354 | 5,223,456 |
| 1 | 5,234,735 | 5,234,823 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 5,214,727 | 5,214,836 |
| 4 | CDS | 5,214,925 | 5,214,998 |
| 3 | CDS | 5,221,287 | 5,221,350 |
| 2 | CDS | 5,223,354 | 5,223,456 |
| 1 | CDS | 5,234,735 | 5,234,755 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 5,116,307 | 5,138,118 | Link |
CDS sequence
ATGGATACTTTCACAGTTCAGGATTCCACTGCAATGAGCTGGTGGAGGAATAATTTCTGGATCATCTTAGCTGTGGCCATCATCGTTGTCTCTGTGGGTCTGGGCCTCATCCTGTACTGTGTCTGCAAGAAATGGGAAATTGCCAAGCCCCTGAAACACAAGCAAGTAGATGAAGAAAAGATGTATGAGAATGTTCTTAATGAGTCGCCAGTTCAATTACCGCCTCTGCCACCGAGGAATTGGCCTTCTCTAGAAGACTCTTATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTACCTCAGCCTCCGGAGTAG
Amino sequence
MDTFTVQDSTAMSWWRNNFWIILAVAIIVVSVGLGLILYCVCKKWEIAKPLKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSYGVLLCHPGWSAMARSRLTASSASRVHAILLPQPPE*