ENST00000698358.1 SMCO2
Information
- Transcript ID
- ENST00000698358.1
- Genome
- hg38
- Position
- chr12:27,446,745-27,502,185
- Strand
- +
- CDS length
- 645
- Amino acid length
- 215
- Gene symbol
- SMCO2
- Gene type
- protein-coding
- Gene description
- single-pass membrane protein with coiled-coil domains 2
- Gene Entrez Gene ID
- 341346
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 27,446,745 | 27,446,825 |
| 2 | 27,474,786 | 27,474,913 |
| 3 | 27,488,460 | 27,488,547 |
| 4 | 27,494,300 | 27,494,356 |
| 5 | 27,495,680 | 27,495,855 |
| 6 | 27,501,923 | 27,502,185 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 27,474,789 | 27,474,913 |
| 3 | CDS | 27,488,460 | 27,488,547 |
| 4 | CDS | 27,494,300 | 27,494,356 |
| 5 | CDS | 27,495,680 | 27,495,855 |
| 6 | CDS | 27,501,923 | 27,502,121 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr12 | 27,599,678 | 27,655,118 | Link |
CDS sequence
ATGTTGGAGCTAGAGGCTGAGCATGACCAGGACCTGAGTAAACAGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCTCCTTGAACTCTTATTAAAAGACATGCTGACCCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATGGAAACGTGCACTGAGGATTTTCATCATGTTTGATGTCCTCACCGTCACTGGACTTTTATGTTACATACTATTTTTTGGTGCTACATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGGAAGTGGAAGCCTTGTTACCCTCCTAA
Amino sequence
MLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS*