ENST00000377759.9 SNX5

Information
Transcript ID
ENST00000377759.9
Genome
hg38
Position
chr20:17,941,600-17,968,794
Strand
-
CDS length
1,215
Amino acid length
405
Gene symbol
SNX5
Gene type
protein-coding
Gene description
sorting nexin 5
Gene Entrez Gene ID
27131
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
13 17,941,600 17,942,407
12 17,943,110 17,943,195
11 17,947,486 17,947,645
10 17,948,890 17,948,976
9 17,949,064 17,949,103
8 17,950,132 17,950,207
7 17,950,291 17,950,396
6 17,951,500 17,951,595
5 17,952,587 17,952,710
4 17,953,996 17,954,117
3 17,955,365 17,955,475
2 17,956,933 17,957,037
1 17,968,375 17,968,794
CDS
Exon number Type Start Stop
13 CDS 17,942,357 17,942,407
12 CDS 17,943,110 17,943,195
11 CDS 17,947,486 17,947,645
10 CDS 17,948,890 17,948,976
9 CDS 17,949,064 17,949,103
8 CDS 17,950,132 17,950,207
7 CDS 17,950,291 17,950,396
6 CDS 17,951,500 17,951,595
5 CDS 17,952,587 17,952,710
4 CDS 17,953,996 17,954,117
3 CDS 17,955,365 17,955,475
2 CDS 17,956,933 17,957,037
1 CDS 17,968,375 17,968,425
Other genome
Genome Chromosome Start End Links
hg19 chr20 17,922,244 17,949,437 Link
CDS sequence
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGTTGATCCCTCGCTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATTTACAGTGCACACAAAGACCACACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATTGAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCAGAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCGCTGTGTTTAAGAAGACTGTGTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGCAACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTTCAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGAACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTTGCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTATTGAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAGGGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGCTCCTCCGATACTACATGCTCAACATTGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAGAACTCAAACAAAGCTCTGGATAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTGCCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAAAGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTGTTCAAGAATAACTGA
Amino sequence
MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN*