ENST00000252599.9 COLGALT1

Information
Transcript ID
ENST00000252599.9
Genome
hg38
Position
chr19:17,555,649-17,583,157
Strand
+
CDS length
1,869
Amino acid length
623
Gene symbol
COLGALT1
Gene type
protein-coding
Gene description
collagen beta(1-O)galactosyltransferase 1
Gene Entrez Gene ID
79709
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 17,555,649 17,555,973
2 17,559,311 17,559,421
3 17,560,348 17,560,465
4 17,567,406 17,567,540
5 17,568,509 17,568,713
6 17,572,483 17,572,602
7 17,577,195 17,577,271
8 17,577,361 17,577,467
9 17,577,957 17,578,089
10 17,579,482 17,579,609
11 17,580,699 17,580,905
12 17,581,177 17,583,157
CDS
Exon number Type Start Stop
1 CDS 17,555,714 17,555,973
2 CDS 17,559,311 17,559,421
3 CDS 17,560,348 17,560,465
4 CDS 17,567,406 17,567,540
5 CDS 17,568,509 17,568,713
6 CDS 17,572,483 17,572,602
7 CDS 17,577,195 17,577,271
8 CDS 17,577,361 17,577,467
9 CDS 17,577,957 17,578,089
10 CDS 17,579,482 17,579,609
11 CDS 17,580,699 17,580,905
12 CDS 17,581,177 17,581,444
Other genome
Genome Chromosome Start End Links
hg19 chr19 17,666,458 17,693,966 Link
CDS sequence
ATGGCGGCGGCCCCACGCGCGGGCCGGCGGCGCGGGCAGCCGCTCCTGGCGCTGCTGCTTCTGCTGCTGGCGCCACTGCCGCCGGGGGCCCCGCCGGGCGCCGACGCCTACTTCCCCGAGGAGCGCTGGAGCCCGGAGTCGCCCCTGCAGGCGCCGCGCGTGCTCATCGCGCTGTTGGCGCGAAACGCGGCCCACGCGTTGCCCACCACGCTGGGCGCACTCGAGCGGCTGCGGCACCCGCGGGAGCGCACGGCGCTATGGGTGGCTACGGACCACAACATGGATAACACGTCAACTGTGCTGCGGGAGTGGCTGGTGGCCGTGAAGAGTTTGTACCATTCCGTGGAGTGGCGGCCAGCAGAGGAGCCCAGGTCCTACCCGGACGAGGAAGGCCCGAAACACTGGTCTGACTCACGCTACGAGCATGTCATGAAGTTGCGCCAGGCAGCCCTGAAATCAGCTCGAGACATGTGGGCTGATTACATCCTGTTTGTAGATGCGGACAACCTGATCCTCAACCCTGACACACTGAGCCTGCTCATCGCTGAGAACAAGACGGTGGTCGCCCCCATGCTGGATTCCCGGGCTGCGTACTCCAACTTCTGGTGTGGAATGACTTCCCAGGGCTACTACAAGCGCACACCTGCCTACATCCCTATCCGCAAGCGAGACCGCCGGGGCTGCTTTGCAGTTCCCATGGTGCACTCGACCTTCCTGATCGACCTGCGGAAGGCGGCGTCCAGGAACCTGGCCTTCTACCCACCTCACCCTGACTACACCTGGTCCTTTGACGACATCATCGTCTTTGCCTTCTCCTGCAAGCAGGCAGAGGTTCAGATGTATGTGTGCAACAAGGAGGAGTACGGATTCTTGCCAGTGCCATTGCGCGCCCACAGCACCCTCCAGGATGAGGCCGAGAGCTTCATGCATGTGCAGCTGGAGGTCATGGTGAAGCACCCGCCCGCAGAGCCCTCCCGCTTCATCTCGGCTCCCACCAAGACACCGGACAAGATGGGCTTCGACGAGGTCTTCATGATCAACCTGAGGCGGCGGCAGGACCGGCGGGAGCGCATGCTGCGGGCGCTGCAGGCACAGGAGATCGAGTGCCGGCTGGTGGAGGCCGTGGACGGCAAAGCCATGAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGCCTGGCTACCGGGACCCCTACCACGGCCGGCCCCTCACCAAGGGTGAGCTGGGCTGCTTCCTGAGCCACTACAACATCTGGAAGGAGGTGGTGGACCGGGGGCTGCAGAAATCGCTTGTGTTTGAGGATGACCTGCGTTTTGAGATCTTCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCGGGAGGGCCTGGACTGGGACCTCATCTATGTGGGCCGGAAGCGGATGCAGGTGGAGCACCCCGAGAAGGCTGTGCCTCGCGTGAGGAACCTGGTGGAGGCCGACTATTCCTACTGGACCCTGGCCTACGTGATCTCCCTGCAAGGCGCCCGCAAACTGCTGGCTGCTGAGCCGCTCTCCAAGATGCTGCCTGTGGACGAGTTCCTGCCCGTCATGTTCGACAAACACCCAGTGTCCGAGTACAAGGCCCACTTCTCCCTCCGCAACCTGCATGCCTTCTCTGTGGAGCCGCTGCTCATCTACCCCACACACTACACAGGAGACGATGGCTATGTGAGTGACACCGAGACCTCAGTCGTATGGAACAATGAGCACGTCAAGACCGACTGGGACCGCGCCAAGTCCCAGAAGATGCGGGAGCAGCAGGCACTGAGCCGTGAGGCCAAGAACTCGGACGTGCTCCAGTCCCCACTGGACAGTGCTGCCCGGGATGAACTCTGA
Amino sequence
MAAAPRAGRRRGQPLLALLLLLLAPLPPGAPPGADAYFPEERWSPESPLQAPRVLIALLARNAAHALPTTLGALERLRHPRERTALWVATDHNMDNTSTVLREWLVAVKSLYHSVEWRPAEEPRSYPDEEGPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSLLIAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRRGCFAVPMVHSTFLIDLRKAASRNLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEEYGFLPVPLRAHSTLQDEAESFMHVQLEVMVKHPPAEPSRFISAPTKTPDKMGFDEVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSYWTLAYVISLQGARKLLAAEPLSKMLPVDEFLPVMFDKHPVSEYKAHFSLRNLHAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVKTDWDRAKSQKMREQQALSREAKNSDVLQSPLDSAARDEL*