ENST00000593829.6 LSM4
Information
- Transcript ID
- ENST00000593829.6
- Genome
- hg38
- Position
- chr19:18,306,236-18,323,076
- Strand
- -
- CDS length
- 420
- Amino acid length
- 140
- Gene symbol
- LSM4
- Gene type
- protein-coding
- Gene description
- LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
- Gene Entrez Gene ID
- 25804
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 18,306,236 | 18,307,555 |
| 4 | 18,309,678 | 18,309,861 |
| 3 | 18,312,604 | 18,312,702 |
| 2 | 18,316,024 | 18,316,065 |
| 1 | 18,323,018 | 18,323,076 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 18,307,464 | 18,307,555 |
| 4 | CDS | 18,309,678 | 18,309,861 |
| 3 | CDS | 18,312,604 | 18,312,702 |
| 2 | CDS | 18,316,024 | 18,316,065 |
| 1 | CDS | 18,323,018 | 18,323,020 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr19 | 18,417,046 | 18,433,886 | Link |
CDS sequence
ATGCTTCCCTTGTCACTGCTGAAGACGGCTCAGAATCACCCCATGTTGGTGGAGCTGAAAAATGGGGAGACGTACAATGGACACCTGGTGAGCTGCGACAACTGGATGAACATTAACCTGCGAGAAGTCATCTGCACGTCCAGGGACGGGGACAAGTTCTGGCGGATGCCCGAGTGCTACATCCGCGGCAGCACCATCAAGTACCTGCGCATCCCCGACGAGATCATCGACATGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGCGGCCGCGGAGGCCTGCAGCAGCAGAAGCAGCAGAAAGGCCGCGGCATGGGCGGCGCTGGCCGAGGTGTGTTTGGTGGCCGGGGCCGAGGTGGGATCCCGGGCACAGGCAGAGGCCAGCCAGAGAAGAAGCCTGGCAGACAGGCGGGCAAACAGTGA
Amino sequence
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAGKQ*