ENST00000580219.5 SNX11
Information
- Transcript ID
- ENST00000580219.5
- Genome
- hg38
- Position
- chr17:48,107,549-48,121,808
- Strand
- +
- CDS length
- 789
- Amino acid length
- 263
- Gene symbol
- SNX11
- Gene type
- protein-coding
- Gene description
- sorting nexin 11
- Gene Entrez Gene ID
- 29916
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 48,107,549 | 48,107,596 |
| 2 | 48,112,031 | 48,112,111 |
| 3 | 48,112,574 | 48,112,660 |
| 4 | 48,113,301 | 48,113,401 |
| 5 | 48,118,704 | 48,118,799 |
| 6 | 48,118,974 | 48,119,186 |
| 7 | 48,121,235 | 48,121,808 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 48,112,094 | 48,112,111 |
| 3 | CDS | 48,112,574 | 48,112,660 |
| 4 | CDS | 48,113,301 | 48,113,401 |
| 5 | CDS | 48,118,704 | 48,118,799 |
| 6 | CDS | 48,118,974 | 48,119,186 |
| 7 | CDS | 48,121,235 | 48,121,508 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 46,184,911 | 46,199,170 | Link |
CDS sequence
ATGGTCTGCAGAGAACAGGAGGTGATTACAGTGCGTGTTCAGGACCCCCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATTATAAGATATTCCTCCATACCAACAGCAAAGCCTTTACTGCCAAGACTTCCTGTGTGCGGCGCCGCTACCGTGAGTTCGTGTGGCTGAGAAAGCAGCTACAGAGAAATGCTGGTTTGGTGCCTGTTCCTGAACTTCCTGGGAAGTCAACCTTCTTCGGCACCTCAGATGAGTTCATTGAGAAGCGACGACAAGGTCTGCAGCACTTCCTTGAAAAGGTCCTGCAGAGTGTGGTTCTCCTGTCAGACAGCCAGTTGCACCTATTCCTGCAAAGCCAGCTCTCGGTGCCTGAGATAGAAGCCTGTGTCCAGGGCCGAAGTACCATGACTGTGTCTGATGCCATTCTTCGATATGCTATGTCAAACTGTGGCTGGGCCCAGGAAGAGAGGCAGAGCTCTTCTCACCTGGCTAAAGGAGACCAGCCTAAGAGTTGCTGCTTTCTTCCAAGATCGGGTAGGAGGAGCTCTCCCTCACCGCCTCCCAGTGAAGAAAAGGACCATTTAGAAGTGTGGGCTCCAGTTGTTGACTCTGAGGTTCCTTCCTTGGAAAGTCCCACTCTCCCACCCCTCTCCTCACCATTATGCTGTGATTTTGGAAGACCCAAAGAGGGAACCTCCACTCTTCAGTCTGTGAGGAGGGCTGTGGGAGGAGATCATGCTGTGCCTTTGGACCCTGGTCAGTTAGAAACAGTTTTGGAAAAGTGA
Amino sequence
MVCREQEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEGTSTLQSVRRAVGGDHAVPLDPGQLETVLEK*