ENST00000553231.5 COPZ1
Information
- Transcript ID
- ENST00000553231.5
- Genome
- hg38
- Position
- chr12:54,325,139-54,350,354
- Strand
- +
- CDS length
- 495
- Amino acid length
- 165
- Gene symbol
- COPZ1
- Gene type
- protein-coding
- Gene description
- COPI coat complex subunit zeta 1
- Gene Entrez Gene ID
- 22818
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 54,325,139 | 54,325,181 |
| 2 | 54,342,206 | 54,342,287 |
| 3 | 54,343,225 | 54,343,316 |
| 4 | 54,345,460 | 54,345,515 |
| 5 | 54,347,767 | 54,347,844 |
| 6 | 54,348,000 | 54,348,051 |
| 7 | 54,349,620 | 54,349,658 |
| 8 | 54,350,246 | 54,350,354 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 54,325,164 | 54,325,181 |
| 2 | CDS | 54,342,206 | 54,342,287 |
| 3 | CDS | 54,343,225 | 54,343,316 |
| 4 | CDS | 54,345,460 | 54,345,515 |
| 5 | CDS | 54,347,767 | 54,347,844 |
| 6 | CDS | 54,348,000 | 54,348,051 |
| 7 | CDS | 54,349,620 | 54,349,658 |
| 8 | CDS | 54,350,246 | 54,350,323 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr12 | 54,718,923 | 54,744,138 | Link |
CDS sequence
ATGGAGGCGCTGATTTTGTACTATGACGACACCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAACAAGACCCATCGGACTGACAGTGAAATTGCCCTCTTGGAAGGCCTGACAGTGGTATACAAAAGCAGTATAGATCTCTATTTCTATGTGATTGGCAGCTCCTATGAAAATGAGCTGATGCTTATGGCTGTTCTGAACTGTCTCTTCGACTCATTGAGCCAGATGCTGAGGAAAAATGTAGAAAAGCGAGCACTGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAAATTGTAGATGGAGGGGTGATCCTAGAGAGTGATCCCCAGCAGGTGGTACACCGGGTGGCATTAAGGGGTGAAGATGTCCCCCTTACGGAGCAGACCGTGTCTCAGGTATACCTCTTCTCTCTTCATCCCCTCAGTGGGTTTGAATTTTTTTGGAATTTTCCAAACAATCTGCTAGGGCCTTAG
Amino sequence
MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVYLFSLHPLSGFEFFWNFPNNLLGP*