ENST00000296581.11 LSM6

Information
Transcript ID
ENST00000296581.11
Genome
hg38
Position
chr4:146,175,718-146,191,535
Strand
+
CDS length
243
Amino acid length
81
Gene symbol
LSM6
Gene type
protein-coding
Gene description
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Entrez Gene ID
11157
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 146,175,718 146,175,811
2 146,182,912 146,183,015
3 146,187,274 146,187,387
4 146,189,622 146,191,535
CDS
Exon number Type Start Stop
2 CDS 146,182,922 146,183,015
3 CDS 146,187,274 146,187,387
4 CDS 146,189,622 146,189,656
Other genome
Genome Chromosome Start End Links
hg19 chr4 147,096,870 147,112,687 Link
CDS sequence
ATGAGTCTTCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATCATCGGACGACCAGTTGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATGGACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGACGGATGTGA
Amino sequence
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM*