ENST00000342644.9 SNX21
Information
- Transcript ID
- ENST00000342644.9
- Genome
- hg38
- Position
- chr20:45,833,852-45,842,881
- Strand
- +
- CDS length
- 600
- Amino acid length
- 200
- Gene symbol
- SNX21
- Gene type
- protein-coding
- Gene description
- sorting nexin family member 21
- Gene Entrez Gene ID
- 90203
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 45,833,852 | 45,833,940 |
| 2 | 45,834,201 | 45,834,468 |
| 3 | 45,834,959 | 45,835,116 |
| 4 | 45,840,639 | 45,840,780 |
| 5 | 45,842,033 | 45,842,881 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 45,833,920 | 45,833,940 |
| 2 | CDS | 45,834,201 | 45,834,468 |
| 3 | CDS | 45,834,959 | 45,835,116 |
| 4 | CDS | 45,840,639 | 45,840,780 |
| 5 | CDS | 45,842,033 | 45,842,043 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr20 | 44,462,491 | 44,471,520 | Link |
CDS sequence
ATGCACCGTGGGACGCAGGAGGGTGCCATGGCCTCCCGGCTCCTGCACCGGCTGCGGCACGCCTTGGCCGGCGACGGCCCCGGGGAGGCGGCGGCCAGTCCAGAGGCCGAGCAGTTTCCGGAGAGCTCAGAGCTGGAGGACGACGACGCCGAGGGCCTGTCCTCCCGACTCAGCGGCACCCTCAGCTTCACCAGCGCCGAGGACGACGAGGACGACGAGGACGAGGACGACGAGGAGGCTGGCCCTGACCAGCTGCCCCTCGGGGATGGGACGTCAGGAGAAGACGCAGAACGGAGCCCCCCACCTGATGGGCAGTGGGGCAGTCAGCTCCTGGCGCGGCAGCTGCAGGATTTCTGGAAGAAGTCCCGGAACACCTTGGCACCCCAGCGGCTGCTCTTCGAAGTGACCAGCGCTAACGTTGTCAAGGACCCGCCCTCCAAGTACGTGCTCTACACCCTCGCCGTGATCGGCCCAGGACCGCCAGATTGCCAGCCAGCCCAGATCTCTCGCCGTTACTCGGACTTTGAGCGGCTGCACCGAAACCTGCAGCGGCAATTCCGGGGCCCAATGGCTGCCATCTCCTTCCCCCAGTCTCACTAA
Amino sequence
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPQSH*