ENST00000559554.5 CHRNA5

Information
Transcript ID
ENST00000559554.5
Genome
hg38
Position
chr15:78,565,571-78,593,535
Strand
+
CDS length
483
Amino acid length
161
Gene symbol
CHRNA5
Gene type
protein-coding
Gene description
cholinergic receptor nicotinic alpha 5 subunit
Gene Entrez Gene ID
1138
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 78,565,571 78,565,825
2 78,580,811 78,580,962
3 78,586,645 78,586,689
4 78,588,314 78,588,423
5 78,589,805 78,589,849
6 78,593,092 78,593,535
CDS
Exon number Type Start Stop
1 CDS 78,565,720 78,565,825
2 CDS 78,580,811 78,580,962
3 CDS 78,586,645 78,586,689
4 CDS 78,588,314 78,588,423
5 CDS 78,589,805 78,589,849
6 CDS 78,593,092 78,593,116
Other genome
Genome Chromosome Start End Links
hg19 chr15 78,857,913 78,885,877 Link
CDS sequence
ATGGCGGCGCGGGGGTCAGGGCCCCGCGCGCTCCGCCTGCTGCTCTTGGTCCAGCTGGTCGCGGGGCGCTGCGGTCTAGCGGGCGCGGCGGGCGGCGCGCAGAGAGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGGATGTGGATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGTGTTCCTTCAGACTCTGTCTGGACACCAGACATCGTTTTGTTTGATAATGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTTGTTGAAGATTGGAAATTCATAG
Amino sequence
MAARGSGPRALRLLLLVQLVAGRCGLAGAAGGAQRGLSEPSSIAKHEDSLLKDLFQDYERWVRPVEHLNDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYGGIKVIRVPSDSVWTPDIVLFDNADGRFEGTSTKTVIRLLKIGNS*