ENST00000397537.3 SMCO1
Information
- Transcript ID
- ENST00000397537.3
- Genome
- hg38
- Position
- chr3:196,506,879-196,515,346
- Strand
- -
- CDS length
- 645
- Amino acid length
- 215
- Gene symbol
- SMCO1
- Gene type
- protein-coding
- Gene description
- single-pass membrane protein with coiled-coil domains 1
- Gene Entrez Gene ID
- 255798
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 3 | 196,506,879 | 196,508,331 |
| 2 | 196,509,520 | 196,509,669 |
| 1 | 196,515,160 | 196,515,346 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 3 | CDS | 196,507,887 | 196,508,331 |
| 2 | CDS | 196,509,520 | 196,509,669 |
| 1 | CDS | 196,515,160 | 196,515,209 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr3 | 196,233,750 | 196,242,217 | Link |
CDS sequence
ATGAACAATGAAACCACAACCCTGATATCCTTGAAGGAGGCAATGAAAAGAGTAGACCACAAACTCCAAGCGTTAGAAACACAGTTCAAAGAACTAGACTTCACCAAGGATAACCTGATGCAGAAATTCGAACATCATAGTAAGGCTTTGGCAAGCCAAGCAGCCCAAGATGAGATGTGGACAGCAGTTCGGGCACTCCAGCTCACTTCAATGGAATTGAATATTTTATACAGCTACGTCATTGAAGTACTTATCTGCTTGCATACTCGTGTGCTTGAGAAGCTGCCAGACCTGGTGAGAGGTCTTCCAACCTTAGCCTCTGTACTCAGAAGAAAAGTTAAGAACAAGCGCGTTAGAGTTGTATGGGAGTCCATACTGGAGGAGTGTGGGCTGCAAGAAGGAGACATCACAGCACTTTGTACCTTCTTTATTGCACGTGGTAACAAGGCAGAACACTATACTGCTAAAGTGAGGCAGATGTACATCAGGGATGTCACGTTCCTAATTACTAACATGGTAAAGAACCAGGCTCTGCAGGACAGTTTGCTGAGGGCTGTGCAGGTAATTGAGAAGGGGAAAGCAGTTAGGACCCCTGAAAAGCAAAAGTCATCCCTCGAAGAGTTGATACCATCTGTCAAAAACTAA
Amino sequence
MNNETTTLISLKEAMKRVDHKLQALETQFKELDFTKDNLMQKFEHHSKALASQAAQDEMWTAVRALQLTSMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRKVKNKRVRVVWESILEECGLQEGDITALCTFFIARGNKAEHYTAKVRQMYIRDVTFLITNMVKNQALQDSLLRAVQVIEKGKAVRTPEKQKSSLEELIPSVKN*