ENST00000221573.11 SNAPC2
Information
- Transcript ID
- ENST00000221573.11
- Genome
- hg38
- Position
- chr19:7,920,338-7,923,250
- Strand
- +
- CDS length
- 1,005
- Amino acid length
- 335
- Gene symbol
- SNAPC2
- Gene type
- protein-coding
- Gene description
- small nuclear RNA activating complex polypeptide 2
- Gene Entrez Gene ID
- 6618
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 7,920,338 | 7,920,549 |
| 2 | 7,921,423 | 7,921,542 |
| 3 | 7,921,705 | 7,921,773 |
| 4 | 7,922,035 | 7,922,347 |
| 5 | 7,922,445 | 7,923,250 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 7,920,367 | 7,920,549 |
| 2 | CDS | 7,921,423 | 7,921,542 |
| 3 | CDS | 7,921,705 | 7,921,773 |
| 4 | CDS | 7,922,035 | 7,922,347 |
| 5 | CDS | 7,922,445 | 7,922,764 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr19 | 7,985,223 | 7,988,135 | Link |
CDS sequence
ATGAAGCCACCTCCCAGGCGGCGAGCGGCCCCGGCGCGCTATCTGGGCGAGGTGACCGGTCCCGCGACCTGGAGCGCTCGCGAGAAGCGGCAGCTAGTGCGACTCCTGCAGGCGCGGCAGGGCCAGCCGGAGCCGGACGCCACCGAGCTGGCCCGGGAGCTGCGGGGCCGGAGCGAGGCTGAGATCCGGGTCTTCCTCCAGCAGCTCAAGGGCCGCGTAGCCCGGGAGGCCATTCAGAAAGTGCATCCGGGTGGCCTTCAGGGACCAAGGCGCCGGGAGGCACAGCCCCCAGCCCCCATAGAGGTCTGGACGGATCTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCCTGGCAGTGGCTTTCTCGCAGGTGCTCACCATCGCGGCCACGGAACCGGTCACCCTCCTGCACTCCAAGCCCCCCAAGCCCACGCAGGCCCGTGGAAAGCCTTTGCTCCTGAGCGCCCCTGGAGGACAGGAAGACCCCGCCCCTGAAATACCTAGCTCTGCCCCTGCTGCACCTAGCTCCGCACCCAGGACTCCTGACCCTGCCCCTGAGAAACCTTCTGAGTCGTCGGCTGGTCCCTCCACTGAAGAAGACTTTGCTGTGGACTTTGAGAAGATCTACAAGTACTTGTCCTCTGTCTCCCGAAGTGGCCGCAGCCCCGAGCTCTCAGCAGCTGAGTCCGCTGTGGTCCTCGACCTGCTCATGTCACTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGTTGAGCATATGACGGAGACGTACCTACGCCTGACAGCCCCCCAGCCCATTCCCGCTGGAGGGAGCCTGGGGCCTGCAGCAGAAGGGGATGGGGCTGGCTCCAAGGCACCAGAGGAGACCCCCCCAGCCACCGAGAAGGCCGAGCACAGCGAACTGAAATCGCCTTGGCAAGCAGCTGGGATCTGTCCCCTGAACCCGTTCCTGGTGCCCCTGGAGCTTCTGGGTCGGGCAGCCACCCCTGCCAGGTGA
Amino sequence
MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEAEIRVFLQQLKGRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAVAFSQVLTIAATEPVTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPRTPDPAPEKPSESSAGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSLPEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEETPPATEKAEHSELKSPWQAAGICPLNPFLVPLELLGRAATPAR*