ENST00000542896.5 PDCD2

Information
Transcript ID
ENST00000542896.5
Genome
hg38
Position
chr6:170,578,482-170,584,612
Strand
-
CDS length
897
Amino acid length
299
Gene symbol
PDCD2
Gene type
protein-coding
Gene description
programmed cell death 2
Gene Entrez Gene ID
5134
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
6 170,578,482 170,578,656
5 170,578,857 170,578,970
4 170,580,002 170,580,105
3 170,583,057 170,583,188
2 170,583,505 170,583,747
1 170,584,299 170,584,612
CDS
Exon number Type Start Stop
6 CDS 170,578,636 170,578,656
5 CDS 170,578,857 170,578,970
4 CDS 170,580,002 170,580,105
3 CDS 170,583,057 170,583,188
2 CDS 170,583,505 170,583,747
1 CDS 170,584,299 170,584,581
Other genome
Genome Chromosome Start End Links
hg19 chr6 170,887,570 170,893,700 Link
CDS sequence
ATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCGCAGCGAGCAGTTCCCCAGCAAGGTGGGCGGGCGGCCGGCATGGCTGGGCGCGGCCGGGCTGCCGGGGCCCCAGGCCCTGGCCTGCGAGCTGTGCGGCCGCCCGCTCTCCTTCCTGCTGCAGGTGTATGCGCCGCTGCCTGGCCGCCCGGACGCCTTCCACCGCTGCATCTTCCTCTTCTGCTGCCGCGAGCAGCCGTGCTGTGCCGGCCTGCGAGTTTTTAGGAATCAACTACCCAGGAAAAACGATTTTTACTCATATGAGCCACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATCTCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGCATATTACTGCAGCAAGGAGCATCAGACCCTAGACTGGAGATTGGGACATAAGCAGGCTTGTGCACAACCAGATCATCTGGACCATATAATTCCAGACCACAACTTCCTTTTTCCAGAATTTGAAATTGTAATAGAAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAGAGATTATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAATTTTTCAGAAGTTTAAAACTCAGATAGCCCTTGAACCAGAACAGATTCTTAGATATGGCAGAGGTATTGCCCCCATCTGGATTTCTGGTGAAAATATTCCTCAAGAAAAGGATATTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATTCCAGTTTTCAGACACGGTCTATTGA
Amino sequence
MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSFLLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDHIIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEEELDSMAKHESREDKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCPCGAKRILEFQFSDTVY*