ENST00000339987.7 SDCBP2
Information
- Transcript ID
- ENST00000339987.7
- Genome
- hg38
- Position
- chr20:1,309,975-1,325,869
- Strand
- -
- CDS length
- 879
- Amino acid length
- 293
- Gene symbol
- SDCBP2
- Gene type
- protein-coding
- Gene description
- syndecan binding protein 2
- Gene Entrez Gene ID
- 27111
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 9 | 1,309,975 | 1,310,495 |
| 8 | 1,310,800 | 1,310,891 |
| 7 | 1,312,337 | 1,312,508 |
| 6 | 1,312,587 | 1,312,762 |
| 5 | 1,313,340 | 1,313,498 |
| 4 | 1,318,318 | 1,318,418 |
| 3 | 1,319,590 | 1,319,659 |
| 2 | 1,320,363 | 1,320,435 |
| 1 | 1,325,830 | 1,325,869 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 9 | CDS | 1,310,441 | 1,310,495 |
| 8 | CDS | 1,310,800 | 1,310,891 |
| 7 | CDS | 1,312,337 | 1,312,508 |
| 6 | CDS | 1,312,587 | 1,312,762 |
| 5 | CDS | 1,313,340 | 1,313,498 |
| 4 | CDS | 1,318,318 | 1,318,418 |
| 3 | CDS | 1,319,590 | 1,319,659 |
| 2 | CDS | 1,320,363 | 1,320,416 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr20 | 1,290,619 | 1,306,513 | Link |
CDS sequence
ATGTCATCCCTGTACCCATCTCTAGAGGACCTAAAAGTGGACCAAGCCATTCAGGCCCAGGTCAGAGCCTCACCCAAGATGCCAGCCCTGCCAGTCCAGGCAACAGCCATTTCCCCACCACCAGTTTTGTACCCAAACTTGGCAGAACTGGAAAATTATATGGGTCTTTCCCTCTCCAGCCAAGAAGTCCAGGAGAGCCTGCTTCAGATTCCAGAGGGTGACAGTACAGCGGTCTCGGGCCCCGGGCCCGGCCAGATGGTGGCACCGGTAACCGGGTACAGCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGGGTGCGCGAGATCCACCTGTGCAAGGACGAGCGCGGCAAGACCGGGCTGAGGCTGCGGAAGGTCGACCAGGGGCTCTTTGTGCAGTTGGTCCAGGCCAACACCCCTGCATCCCTTGTGGGGCTGCGCTTTGGGGACCAGCTCCTGCAGATTGACGGGCGTGACTGTGCTGGGTGGAGCTCGCACAAAGCCCATCAGGTGGTGAAGAAGGCATCAGGCGATAAGATTGTCGTGGTGGTTCGGGACAGGCCGTTCCAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCACGTCGGCTTCGTGATCAAGAAGGGGAAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGGCTCCTCACCAACCACTACGTGTGTGAGGTGGACGGGCAGAATGTTATCGGGCTGAAGGACAAAAAGATCATGGAGATTCTGGCCACGGCTGGGAACGTTGTCACCCTGACCATCATCCCCAGTGTGATCTACGAGCACATGGTCAAAAAGTTGCCTCCAGTCCTGCTCCACCACACCATGGACCACTCCATCCCAGATGCCTGA
Amino sequence
MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA*