ENST00000680999.1 TSEN54
Information
- Transcript ID
- ENST00000680999.1
- Genome
- hg38
- Position
- chr17:75,516,548-75,524,698
- Strand
- +
- CDS length
- 1,794
- Amino acid length
- 598
- Gene symbol
- TSEN54
- Gene type
- protein-coding
- Gene description
- tRNA splicing endonuclease subunit 54
- Gene Entrez Gene ID
- 283989
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 75,516,548 | 75,516,616 |
| 2 | 75,516,746 | 75,516,910 |
| 3 | 75,517,009 | 75,517,072 |
| 4 | 75,517,161 | 75,517,244 |
| 5 | 75,517,557 | 75,517,655 |
| 6 | 75,518,995 | 75,519,047 |
| 7 | 75,521,409 | 75,521,510 |
| 8 | 75,521,705 | 75,522,521 |
| 9 | 75,523,250 | 75,523,335 |
| 10 | 75,523,663 | 75,523,779 |
| 11 | 75,524,262 | 75,524,698 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 75,516,561 | 75,516,616 |
| 2 | CDS | 75,516,746 | 75,516,910 |
| 3 | CDS | 75,517,009 | 75,517,072 |
| 4 | CDS | 75,517,161 | 75,517,244 |
| 5 | CDS | 75,517,557 | 75,517,655 |
| 6 | CDS | 75,518,995 | 75,519,047 |
| 7 | CDS | 75,521,409 | 75,521,510 |
| 8 | CDS | 75,521,705 | 75,522,521 |
| 9 | CDS | 75,523,250 | 75,523,335 |
| 10 | CDS | 75,523,663 | 75,523,779 |
| 11 | CDS | 75,524,262 | 75,524,412 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 73,512,629 | 73,520,779 | Link |
CDS sequence
ATGGAGCCCGAGCCCGAGCCCGCGGCCGTGGAGGTTCCCGCGGGGCGCGTGCTCAGCGCCCGGGAGCTCTTCGCCGCCCGCTCGCGGTCGCAGAAGCTGCCCCAGCGCTCGCATGGCCCCAAGGACTTTCTGCCCGACGGCTCGGCAGCTCAGGCCGAGCGGCTGCGCCGGTGCCGGGAAGAGCTCTGGCAGCTGCTGGCAGAGCAGCGCGTGGAGCGCCTGGGCAGCTTGGTGGCTGCCGAGTGGAGGCCAGAAGAGGGCTTCGTGGAGTTGAAGTCTCCCGCGGGCAAATTCTGGCAGACCATGGGCTTCTCAGAGCAGGGCCGGCAGCGCCTTCACCCGGAAGAGGCCTTGTATCTTCTGGAGTGTGGCTCCATCCACCTCTTCCACCAAGACCTGCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCGACCACACTGTGACCTTCCTGCAGTACCAGGTCTTCAGCCACCTGAAGAGGTTGGGTTATGTGGTTCGACGATTCCAACCAAGCTCTGTCCTGTCCCCGTATGAGAGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGATGGAGATGGCAAGAGAAAGAGGAGCAGCTCCAGCCCTCGGTCCATTAATAAGAAGGCCAAGGCCCTGGACAACTCCCTGCAACCCAAGAGTCTGGCAGCCTCCAGCCCACCTCCCTGCAGCCAGCCCAGCCAATGCCCAGAGGAGAAACCCCAGGAGTCAAGCCCCATGAAGGGCCCAGGGGGCCCCTTTCAGCTTCTGGGGTCCCTGGGCCCCAGCCCTGGCCCGGCCAGGGAGGGGGTGGGGTGCAGCTGGGAGAGTGGCAGAGCCGAGAACGGAGTCACGGGAGCCGGTAAGCGGCGCTGGAACTTCGAGCAGATCTCCTTCCCCAACATGGCTTCAGACAGCCGCCACACCCTTCTGCGCGCCCCAGCCCCAGAGCTGCTCCCGGCCAACGTGGCTGGGCGGGAGACAGACGCTGAGTCCTGGTGCCAGAAGCTGAACCAGCGCAAGGAGAAGCTCTCCAGGCGGGAACGGGAGCACCACGCGGAGGCCGCGCAGTTCCAGGAAGATGTCAACGCCGATCCCGAGGTGCAGCGGTGCTCCAGCTGGCGGGAGTACAAGGAGCTGCTGCAGCGGCGGCAGGTGCAGAGGAGCCAGCGCCGGGCCCCTCACCTGTGGGGCCAGCCCGTCACCCCGCTGCTGAGTCCTGGCCAGGCCAGCTCCCCAGGTACCCCCTCAGCCTGCCACATCTTCGAGGGCCACTGGCAGCTGAGGAATCACAGGACTTTGGAAAGGGCATGGATGAACTGGGATGGATTGAGGCTTAAGGAAGATGTGGGAGGAGGGAGTGGACCCACAAGCACGGTCAGTTCTCCGGCGGCTGCAGCAGGGCCTGTGTGGGAAGGCTTAGAGATGTACCTTGTTTTCTGTGTCCTTGTAGCCGTGGTCCTTCAGCATATCTCTGTGCTGCAGACAACACACCTTCCTGATGGAGGTGCCCGGCTGTTGGAGAAGTCTGGGGGCTTGGAAATCATCTTTGATGTTTACCAGGCCGACGCTGTGGCCACATTCCGAAAGAATAACCCTGGCAAACCCTATGCCCGGATGTGCATTAGTGGATTTGATGAGCCTGTCCCAGACCTCTGCAGCCTCAAGCGGTTGTCTTACCAGAGTGGGGATGTCCCTCTGATCTTTGCCCTGGTGGATCATGGTGACATCTCCTTCTACAGCTTCAGGGACTTCACGTTGCCCCAGGATGTGGGGCACTGA
Amino sequence
MEPEPEPAAVEVPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRVERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPSSVLSPYERQLNLDASVQHLEDGDGKRKRSSSSPRSINKKAKALDNSLQPKSLAASSPPPCSQPSQCPEEKPQESSPMKGPGGPFQLLGSLGPSPGPAREGVGCSWESGRAENGVTGAGKRRWNFEQISFPNMASDSRHTLLRAPAPELLPANVAGRETDAESWCQKLNQRKEKLSRREREHHAEAAQFQEDVNADPEVQRCSSWREYKELLQRRQVQRSQRRAPHLWGQPVTPLLSPGQASSPGTPSACHIFEGHWQLRNHRTLERAWMNWDGLRLKEDVGGGSGPTSTVSSPAAAAGPVWEGLEMYLVFCVLVAVVLQHISVLQTTHLPDGGARLLEKSGGLEIIFDVYQADAVATFRKNNPGKPYARMCISGFDEPVPDLCSLKRLSYQSGDVPLIFALVDHGDISFYSFRDFTLPQDVGH*