Information

Transcript ID: ENST00000540313.1
Genome: hg19
Position: chrX:109,693,793-109,699,554
Strand: +
CDS length: 4,167
Amino acid length: 1,389
Gene symbol: RTL9
Gene type: protein-coding
Gene description: retrotransposon Gag like 9
Gene Entrez Gene ID: 57529

Variants

Display target variant

MGeND data only All data

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Target data	:	MGeND data only
Category	:
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
Search word	:
Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Exon

Exon number	Start	Stop
1	109,693,793	109,697,892
2	109,698,430	109,699,554

CDS

Exon number	Type	Start	Stop
1	CDS	109,693,846	109,697,892
2	CDS	109,698,430	109,698,549

Other genome

Genome	Chromosome	Start	End	Links
hg38	chrX	110,450,565	110,456,326	Link

CDS sequence

ATGTCAATACCCTTACATTCACTGCGATTCAACAATACAATGAGGGAGGAAAATGTTGAGCCCCAAAACAAGCAGATGGCCTTCTGTAGACCAATGACAGAGACCAGAGCAGACGTACAGATTCTGCATTCTCATGTACAGTTGCCTATAGTCTCAACTTCAGCCTCAGACCCTGGAGGGACATCCACACAGTTGATGACATCTCCAGTCTTTGACACCATGTCTGCACCTCTAATGGGAGTACCAAACTCTGGAGCATTGTCCCCACCCCTAATGCCAGCCTCAGACTCTGGGGCACTTTCCCCATTGCTAATGCCAGCCTCAGACTCTGGGGCACTGTCCCCATTGCTAATGCCAGCCTTAGATTCTGGAACATTGTCCCCATTGCTGTCCACTTCAGAGTATGGGGTAATGTCCCCAGGGATGATGACAATTCCTGATTTTGGAACGATGTCCGCAACGCTAATGGTAGCACCAGATTCTGCAGAGATATCACCATTGGCAATGCCAGCTCCATCCTCTGGAGTGGTGTGTACACCTATAATGAGCACTTCATCCTCTGAGGCAATGTCCACACCATTAATGCTAGCCCCAGATTCTGGAGAGTTATCCCCAATTCTAATGCAAGATATGAATCCTGGAGTGATGTCTACACAGCCAGTGCCAGCTCCCAGCTCTGAGGCAATGTCCCCATTGCAAATTACAGATGAAGACACCGAAGCAATGTCCAAAGTGCTAATGACTGCTCTAGCCTCTGGAGAGATATCTTCGCTGCTAATGTCAGGCACGGACTCTGAAGCAATATCCTCACTGATAATGTCAGCTGTAGCTTCTGGAGGTACATCACCCCAGCCAACAAGCACCCAAAACTCTGGGGGAATACCTACCCCGCTCATGTCAGATCTAGACTCTGGAATAATGTCATCGCTTTTAATGTCATCTCCAGGCTCTGAAGTAATGTCCACACCGCTACTGTCAGTCCCAGATGCTGGAGAAATGTCCACATTACCAAAGCCAGCTCCAGATGCTGAAGCAATGTCCCCAGCACTAATGACGGCCCTACCCTCTGGAGTGATGCCCACCCAAACGATGCCAGCCCCAGGCTCTGGGGCGATGTCCCCATGGTCAACACAAAATGTAGACTCTGAAATGATGTCTAATCCGCCAGTGAGAGCAACAGCCTCTGGGGTGATGTCTGCACCACCAGTAAGAGCTTTAGATTCTGGAGCAATGTCCACACCGCTAATGGGAGCCCCAGCCTCTGGAAATATGTCTACATTGCAAAAGACAGTTCCAGCCTCTGGAGCCATGACCACCTCACTGATGACAGTCCCAAGCTCTGGAGTGATGTCCACAGAGCAAATGTCAGCCACAGCCTCTAGAGTAATGTCCGCACAGTTAACAATGGCCAAAACTTCTGGAGCAATGCCCACAGGCTCTATGAAAGCCGTGGCAAAACAATACAAGAGAGCCACAGCCTCTGGAAAGATGTCCACGCCACTGAGGAGAGCTCCAACTTCTGGAGCAATGTCCACCCAACCAGTTACGGCAACAGCCTCTGAAACAATGTCCATGCCACAATTGACAGTCCCAGCCTCTGGATCAATGTCCATGCTGCAAATGAGAGCCCCTGTCTCTGAAGCAATGTCCATGCCACAAATGAGAACCATGGCCTCAGGATTGACATCTGCAGCACAGATGAAAGCCATGACTTCTGGAGCAATGTCCACCCCACTAATGACAGCCCAAACCTCTGGATCAACATCCACGCTGTTAATGAGAGACACAGCCTCAGGAGTGATGTCCTGTCCACAAATGAGATCTCTGGCCTCTGGAGCATTGTCCAAGCCACTAATGACACCCAAAGCCTCAGGAACGATGTTCACGGAGAAAATGACAACCACAGCTTCTGAAGCAATGCCCACACTGCTAATGAGAGACACAGTTTCTGGAGCTCTGTCCATGCCGCAAATGACAGACACAGCCTCTGGAGGGTTGTCTGCATCGCTAATGAGAGACACAGCTTCTGGAGCAATGTCCACATCACAAATGACAGCCACAGTCTCTGGAGGGATGTCCATGCCACTAATGAGAGCTCAAGACCCAGGAGTAATGCCTGCCTCACTAATGAGAGCCAAAGTGTCTGGAAAGATGCTCAGTCAGCCAATGAGCACCCAAGATCCTGGAGGGATGTCCATGTCGCCCATGAAGTCCATGACCGCTGGAGGGATGCAGATGAATTCCCCAACCTCTGATGTGATGTCCACACCAACAGTGAGAGCCTGGACCTCTGAAACAATGTCCACACCACTAATGAGAACCTCAGACCCTGGAGAGAGGCCCTCACTGCTCACAAGAGCTTCATCCTCTGGAGAGATGTCCCTACCACTAATGAGAGCTCCAGCTTCTGGAGAGATAGCCACGCCTCTGAGATCCCCAGCTTATGGAGCCATGTCTGCTCCACAAATGACAGCCACAGCCTCTGGAATGATGTCATCCATGCCACAAGTGAAGGCTCCCATCTCTGGAGCAATGTCCATGCCACTAACAAGATCCACAGCCTCTGGAGGGATGTCCATGCCACTGATGAGAGCCCCAGACTCTAGAGTGACATCCACATCACAAATGATGCCCACAGCTTCTGGAGACATGTGCACACTACCAGTGCGAGCCCCAGCCTCTGGAGGGGTGTCCTCACCACTAGTAAGAGCTCCAGCCTCTGGAACTATGTCCACACCACTAAGGAGACCCTCAGCCTGTGAGACTGTGTCCACAGAGTTAATGAGAGCTTCAGCCTCTGGACATATGTCCACTGCACAAACAACAGCCATGGTCTCTGGAGGGATGTCCAAGCCATTAATGAGAGCCCCGGCCTCTGGAACAATGCCCATGCCTTTAATGTCAGCCATGGCTTCTGGAGAGATGTCTATGCCGCTAATGGAAACCATGGCCTCTGGAGCAACGTCCACATTGCAAACCAGTGTTGCGAACTCTAGATCTATGTCCTTGTCACAAACAACATATACCGTGTCTGGAAGGATGGCCACAGCGCCAATTAGAGCCTCTGCTTCTGGAGCAAGGTCCACATCATTTATGAGAGCCTCAGTTTCTGGATCGATGCCCATGCCACTACCAAGAGCCACAGCCTCTGGATGTGGCATGGGTATGTCCATGCCACAAATGACAGCCACAGACTCTAGAGGGATGTCCACACCACTAATGAGGGCCTCAGGCCCTGGAACAATGTCCACACCACAGACAGCCTTTGGAGTGATGTCCACTCCGGAAATCAAAGCCACAGACTCTGGAGAGGCATCCACCTCTCACATTAACATCACAGCCTCTGGATCAAAGCCCACATCGCACATGACTGCCACAACTCCTGAAACTGCGAAACCACCACCAAAGGAAGTGCCATCCTTCGGAATGTTGACCCCAGCACTCTGCTACCTCTTAGAAGAGCAGGAAGCAGCCCGGGGCTCATGCTCTGTGGAGGAAGAGATGGAGATTGATGAGGAGAAGCAAATGAAGGGGTTTTTGGACGATTCAGAGAGAATGGCATTTCTGGTATCTCTTCATCTGGGAGCAGCAGAGAGGTGGTTCATCTTGCAAATGGAGGTAGGAGAACCTCTCTCACATGAAAATAAATCTTTCCTGAGAAGATCCCAGGGCATATATGACTCCCTATCTGAGATAGACATCCTCAGTGCTGTTCTTTGCCATCCCAAACAGGGCCAAAAGTCAGTCAGGCAGTATGCCACTGACTTCCTGCTGCTGGCCCGACATTTGTCTTGGTCTGATGCCATTCTACGGACCAGGTTTCTGGAAGGACTCTCAGAAGCTGTTACCACCAAAATGGGTCGGATCTTCCTGAAGGTGGCTGGCAGCCTAAAGGAGCTGATAGACAGGTCTCTGTACACCGAGTGCCAGCTGGCTGAAGAGAAGGATTCCCCAGGCAACTCAAGCCAGGTTCTGCCAACAGCCTGTAAGCGGAATAATGAGGAGGCCATGGGGAATGAACTGAGCTCTCAGCAGCAGACTGAGGAGCACCAGCATGTTTCCAAACGCTGTTACTACCTGAAAGAGCATGGAGACCCCCAAGAAGGTCTTCATGATCACCTTGGACAGAGCACAGGCCATCATCAGAAGGCCCATACCAACAAGTAA

Amino sequence

MSIPLHSLRFNNTMREENVEPQNKQMAFCRPMTETRADVQILHSHVQLPIVSTSASDPGGTSTQLMTSPVFDTMSAPLMGVPNSGALSPPLMPASDSGALSPLLMPASDSGALSPLLMPALDSGTLSPLLSTSEYGVMSPGMMTIPDFGTMSATLMVAPDSAEISPLAMPAPSSGVVCTPIMSTSSSEAMSTPLMLAPDSGELSPILMQDMNPGVMSTQPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGGTSPQPTSTQNSGGIPTPLMSDLDSGIMSSLLMSSPGSEVMSTPLLSVPDAGEMSTLPKPAPDAEAMSPALMTALPSGVMPTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRATASGVMSAPPVRALDSGAMSTPLMGAPASGNMSTLQKTVPASGAMTTSLMTVPSSGVMSTEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATASGKMSTPLRRAPTSGAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQMKAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKASGTMFTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDTASGGLSASLMRDTASGAMSTSQMTATVSGGMSMPLMRAQDPGVMPASLMRAKVSGKMLSQPMSTQDPGGMSMSPMKSMTAGGMQMNSPTSDVMSTPTVRAWTSETMSTPLMRTSDPGERPSLLTRASSSGEMSLPLMRAPASGEIATPLRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASGGMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPLRRPSACETVSTELMRASASGHMSTAQTTAMVSGGMSKPLMRAPASGTMPMPLMSAMASGEMSMPLMETMASGATSTLQTSVANSRSMSLSQTTYTVSGRMATAPIRASASGARSTSFMRASVSGSMPMPLPRATASGCGMGMSMPQMTATDSRGMSTPLMRASGPGTMSTPQTAFGVMSTPEIKATDSGEASTSHINITASGSKPTSHMTATTPETAKPPPKEVPSFGMLTPALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARHLSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGNSSQVLPTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEHGDPQEGLHDHLGQSTGHHQKAHTNK*

ENST00000540313.1 RTL9

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